Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L15
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0023 - 7151465-7152111,7152222-7152405                           29   3.5  
04_03_0904 + 20717005-20718087                                         29   6.0  

>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/66 (27%), Positives = 21/66 (31%)
 Frame = +1

Query: 559 PXPPXXXPXRAXXXXLXXXFPQRXXGXLXPXXXPXPPTXAXXPPXLXXXAXXXPPXPLXP 738
           P PP      A    +   FP      + P   P PP  +  PP L       PP P  P
Sbjct: 186 PIPPNPITP-APPSLVPPVFPTPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPP 244

Query: 739 XXRXSP 756
                P
Sbjct: 245 PSLLPP 250


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/138 (20%), Positives = 31/138 (22%), Gaps = 1/138 (0%)
 Frame = +1

Query: 370 PXXXTPXXXXPXX-PXRATPAARXPXXPXRXXXRPLAKXXXXXPXPGXWXXLXXXXXAXP 546
           P   TP    P   P    P  +    P      P        P P             P
Sbjct: 109 PPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTP 168

Query: 547 XXXXPXPPXXXPXRAXXXXLXXXFPQRXXGXLXPXXXPXPPTXAXXPPXLXXXAXXXPPX 726
               P PP   P            P        P   P P T    PP         PP 
Sbjct: 169 YTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPP 228

Query: 727 PLXPXXRXSPXLCXMPXP 780
              P  + +P     P P
Sbjct: 229 TYKPQPKPNPPPTYKPAP 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,242
Number of Sequences: 37544
Number of extensions: 147121
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)