Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L14
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.4  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   7.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   7.9  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/98 (26%), Positives = 35/98 (35%)
 Frame = -1

Query: 723 PXCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*REFAPGLKPPLSSEAP 544
           P C  PP PC    I P    P+F  P  P +      P  P      P   PP+ S +P
Sbjct: 36  PMCAPPPLPCPPPPICP----PQFCPP--PPMCPPPPPPPPP---PMCPPPPPPMPSYSP 86

Query: 543 SAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTH 430
                P+ +     + P            R ++RH TH
Sbjct: 87  CQSYAPAPVFNQYAMQPANDCCCRCGSPCRFMARHRTH 124


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 715 HQATLPLRXRXHQPRSSNPPIPYTNHPRLNIHFHQSPDAVLE 590
           HQ   P+R   H P   N  IP    P++     +SP   LE
Sbjct: 853 HQIPSPMRQGAHNPLGINRSIPDAAPPKIEADSSRSPSEDLE 894


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
            protein H20J18.1a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 715  HQATLPLRXRXHQPRSSNPPIPYTNHPRLNIHFHQSPDAVLE 590
            HQ   P+R   H P   N  IP    P++     +SP   LE
Sbjct: 891  HQIPSPMRQGAHNPLGINRSIPDAAPPKIEADSSRSPSEDLE 932


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,830
Number of Sequences: 27780
Number of extensions: 331781
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)