Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_L12
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 43 3e-04
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 33 0.19
01_01_1048 + 8272486-8272941 33 0.26
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 31 0.79
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 31 0.79
02_02_0637 - 12491706-12492575,12492580-12492657 30 1.8
05_07_0161 + 28089538-28089856,28089921-28090021 29 3.2
08_02_0701 + 20177860-20178603 28 7.3
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277... 28 9.7
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886... 28 9.7
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -1
Query: 357 DAFRCRPPNTSRPPSLHVDDFTA 289
D FR R PNTSRPPS+HVDD+ A
Sbjct: 1564 DTFRQRKPNTSRPPSMHVDDYVA 1586
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -1
Query: 672 RHAHPCTARGSPPTRDSPPATG*TSPRPAERT 577
R P RGSPP R SPPA SP P R+
Sbjct: 225 RSRSPARDRGSPPRRRSPPARRERSPAPRSRS 256
>01_01_1048 + 8272486-8272941
Length = 151
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 381 SRGRGEAPDAFRCRPPNTSRPPSLHVD 301
+RGRG A A+ CRPP P L VD
Sbjct: 10 ARGRGAAAGAYCCRPPGDQAVPPLRVD 36
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 553 PCDIMEVANSYLSVGGASCGGEAVASAVRRLAGCLDTRTEPRSC 422
P DI V S L+V A GG A A+ V + CL T+ + C
Sbjct: 239 PADINRVCPSELAVRAADRGGAAAAAVVACKSACLAFGTDEQCC 282
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 627 DSPPATG*TSPRPAERTMFTIMN*YRATSWKWRTATCPWAARHAGGRRSPAPC 469
+S P T P + T + R + +K+ A+C AA HA G+ P PC
Sbjct: 674 ESAPRGSATWPEEQLPSNSTTQSTLRKSQYKFLKASCQNAATHAWGQLGPCPC 726
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 657 CTARGSPPTRDSPPATG*TSP-RPAERTMFTIMN*YRATSWKWRTATCPWAARHAGGR 487
C GSPPTR P + SP R T + +R T W + + P ++ R
Sbjct: 100 CGTEGSPPTRSRTPRSSRRSPARATSTTHSPFCHSWRTTPWLPTSCSSPTSSTSPSAR 157
>05_07_0161 + 28089538-28089856,28089921-28090021
Length = 139
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 210 VHAHYRHTRGRGAWEAGAPHFGHYPPAPQYMLGGACR--GPRGPRH 79
V R RGRG WEAGA +PP P + G G RH
Sbjct: 95 VRRRMRQGRGRGGWEAGA-----HPPLPMARMPSRLEDGGDSGGRH 135
>08_02_0701 + 20177860-20178603
Length = 247
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 396 VSTAGLLSSQERGSVLVSRQPASLRTALATASPPHDAPPT 515
+ AG L + ++ + P +L A+A ASPP+ PP+
Sbjct: 134 MGVAGKLDDRTMYGLVHQKLPPALVKAIALASPPYPDPPS 173
>05_01_0354 +
2770515-2770655,2770767-2771380,2772152-2772341,
2772570-2772634,2772719-2773214
Length = 501
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 378 RGRGEAPDAFRCRPPNTSRPP 316
+GR A AFRC P T RPP
Sbjct: 76 KGRPPARAAFRCAPSLTCRPP 96
>01_06_1070 -
34286660-34287380,34288020-34288094,34288534-34288636,
34288866-34289091
Length = 374
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 295 HRAAPHLHQPQQGRAAWCGPRALRVCGAGAR 203
H AA H H +G A P R CG G R
Sbjct: 66 HNAATHAHSQNRGVAEQGRPPGRRRCGRGVR 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,615,435
Number of Sequences: 37544
Number of extensions: 399830
Number of successful extensions: 1738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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