Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L06
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   129   4e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   126   5e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.43 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  129 bits (312), Expect = 4e-31
 Identities = 61/91 (67%), Positives = 70/91 (76%)
 Frame = -2

Query: 629 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 450
           REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178

Query: 449 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
           LLAREVLR+RG L R   WDV+ DL+FYR P
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -3

Query: 775 ENPXDVXVISSRPFGQRAVLKFAAHTGATXIAGRFT 668
           ENP DV V+S+R +G RAVLKFAAHTGAT IAGRFT
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  126 bits (303), Expect = 5e-30
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = -2

Query: 629 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 450
           REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179

Query: 449 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
           LLAREVLRLRG + R   W+V+ DL+FYR P
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = -3

Query: 775 ENPXDVXVISSRPFGQRAVLKFAAHTGATXIAGRFT 668
           ENP DV VISSRP+G RAVLKFAAHTGAT IAGRFT
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 623 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 443 AR 438
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 686 YCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPL 516
           + G  +  VL    ++  + +P + ++     D   +   T A    +  + LC+ +S  
Sbjct: 35  HLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK- 93

Query: 515 RFVDIAIPCNTKSSHSI 465
           RF D+A+  NTK +H I
Sbjct: 94  RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 421 VVCFPVTSAGMLWLICSSTVXPEESEKD 338
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 327 ACCSSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 449
           A   +  LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,215
Number of Sequences: 5004
Number of extensions: 59275
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)