Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L06
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   126   3e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   126   3e-29
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     30   2.4  
06_03_0543 + 21967787-21970261                                         29   5.5  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.3  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    28   9.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  126 bits (303), Expect = 3e-29
 Identities = 55/90 (61%), Positives = 68/90 (75%)
 Frame = -2

Query: 626 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 447
           EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWL 181

Query: 446 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
           LAR VL++RG +    +WDV+VDLFFYR P
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -3

Query: 775 ENPXDVXVISSRPFGQRAVLKFAAHTGATXIAGRFTXRCF 656
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR T   F
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  126 bits (303), Expect = 3e-29
 Identities = 55/90 (61%), Positives = 69/90 (76%)
 Frame = -2

Query: 626 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 447
           EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWL 181

Query: 446 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
           LAR VL++RG +    +WDV+VDLFFYR P
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -3

Query: 775 ENPXDVXVISSRPFGQRAVLKFAAHTGATXIAGRFTXRCF 656
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR T   F
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHNCRRASRRHRSA 95
           T C  C    P   + VCPG+R V+ N      R+  A
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKANYDACLLRYSDA 312



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 698  RCYAYCGTFHXQVLLLTRSKLHSREPRLLIVLDPA 594
            RCY + G+ +    LLT  + H +EP L + +  A
Sbjct: 1281 RCYLHAGSINDGFSLLTPLRGHQKEPLLFVGIPDA 1315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,753,123
Number of Sequences: 37544
Number of extensions: 423856
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)