Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L05
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472...    31   1.4  
04_04_0683 - 27234137-27234486,27234645-27234756,27234889-272349...    29   3.2  
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149...    29   3.2  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.2  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.5  
07_03_0624 + 20044406-20044756,20045168-20045221                       28   7.3  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    28   7.3  
11_06_0556 - 24950873-24951078,24951174-24951378,24951458-249515...    28   9.7  

>06_01_0653 -
           4720913-4721152,4721898-4721966,4722059-4722124,
           4722814-4722879,4723001-4723162,4723255-4723347,
           4723449-4723541,4723626-4724273
          Length = 478

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 281 TDVPPQSNSPPGSVLETGSRGSFKRRRAFPPRHHSARLERNTV 409
           +DV PQ+NS PG+      R   +R +A  P   + RL R  +
Sbjct: 296 SDVEPQANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKI 338


>04_04_0683 -
           27234137-27234486,27234645-27234756,27234889-27234961,
           27235071-27235491,27236148-27236403
          Length = 403

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 518 YATPLMSPYNARLESSSTGSSFPADSPKP*ESHSYS 625
           Y + L+ P +  LE  S  SS PAD+     S SYS
Sbjct: 155 YGSMLLRPNSKSLEEESEASSIPADNKSYITSESYS 190


>02_04_0220 -
           21014225-21014386,21014492-21014572,21014739-21014938,
           21014999-21015157,21015248-21015377,21015520-21015673,
           21015785-21015867,21015981-21016040,21016131-21016217
          Length = 371

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 335 IRFRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 201
           +R +GH     +T A    KNNAG L+  Q  Q+    Q GK  L
Sbjct: 209 VRNKGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 143 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 36
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 378 TTLHAWNETPCARRYY 425
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>07_03_0624 + 20044406-20044756,20045168-20045221
          Length = 134

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -3

Query: 447 GRKRCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVSRTLPGGEFDWGGTSVKE*R 268
           GR+R A D  GGR+V     AE    G  RRR  LP       +P  E  WG T+     
Sbjct: 31  GRRRGADDG-GGRSV-----AE--EDGGQRRRSHLPDPAGGPPIPDPEASWGRTATA--A 80

Query: 267 RCP---KASSARTETSRGAKG 214
            C    + SSA   + RG+ G
Sbjct: 81  ACSSGGRRSSAALPSPRGSGG 101


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 438 RCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVSRTLPGGEFD 298
           R +   + GR +   +R +  RGG ARR    P D  SR   GG +D
Sbjct: 395 RASPIELNGRLIHVEERRQIYRGGGARRGRGRPAD-FSRGQSGGRYD 440


>11_06_0556 -
           24950873-24951078,24951174-24951378,24951458-24951588,
           24951691-24951836,24952110-24952175,24953244-24953360,
           24953974-24954063,24954568-24954707
          Length = 366

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 269 RYSLTDVPPQSNSPPGSVLETGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTA 433
           R+ L    P ++  P    E GS+   ++   +  R    R ER   +PP L TA
Sbjct: 65  RHQLRGAQPSTSQKPRHA-EAGSKTHVRQSVLYSERKRQPRHERGGTQPPTLLTA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,360,186
Number of Sequences: 37544
Number of extensions: 475799
Number of successful extensions: 1429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)