Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L05
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   6.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 485  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 604
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 485  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 604
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 391 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 525
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 766  WHGTRESDCLIKTKHCDGPRGC*RNVISA-QC---SECQREEIQASAGK 632
            ++GT  S C+ K  +CDG   C         C    EC  E+ Q ++GK
Sbjct: 956  FNGTAISKCIPKEFYCDGEDDCPEGQDEPDSCFGIGECTHEQFQCTSGK 1004


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 290 PPQSNSPPGSVLETGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 439
           PP+  SP        +R S  RRR  PP     R +R   R P+     R
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 488 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 604
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,969
Number of Sequences: 27780
Number of extensions: 372680
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)