Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_K21
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    85   1e-17
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    48   1e-06
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    41   2e-04
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   4.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   7.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
 Frame = -3

Query: 577 KXTXKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXEPP-PKRPNTIRSGTNTVTKLV 401
           K T   +FK+L KYRP                           K+P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 400 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVQGQ 281
           E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IV+ +
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = -1

Query: 297 ALXKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
           A+ K K+RLG ++H+KT   LA+T V   D+   + +V A+  NF+ +
Sbjct: 178 AIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAK 225



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 705 PXXXLSXFXRWPKYIRIQXQKXVXQXXXKVPPPI 604
           P   LS F +WP+YIR+Q ++ +     KVPP I
Sbjct: 42  PKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAI 75



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 149 EELRKHWGGGVLGNKS 102
           +E R+ WGGG++G K+
Sbjct: 227 DESRRKWGGGIMGGKT 242


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -3

Query: 436 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 290
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 436 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 299
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  SSLAMRALDLLPRTPPPQCLRSSSXALVE 165
           SSL    L L P +PPP+    ++ ALVE
Sbjct: 22  SSLGATPLSLPPSSPPPEFSDEAAEALVE 50


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 415  LCLCRIGWC 441
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 433 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 311
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,806
Number of Sequences: 5004
Number of extensions: 32022
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)