Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_K07
         (1133 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0007 + 10132380-10133201                                         30   3.9  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   9.0  
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...    29   9.0  

>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 668 IPLSXPXQXXXXXPXXPPPXXRLPLPXXSPXRXXRPXPRAPP 793
           +PL  P       P   P    LP P  +P    +P P APP
Sbjct: 97  LPLPGPQPLPQPGPQPNPNPQPLPQPNPNPQPLPQPDPNAPP 138


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 173 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 340
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 792 GGARGXGRXXRXGXLXGRGRRXXGGGXXG 706
           GG+RG GR    G   GRGR   GGG  G
Sbjct: 664 GGSRGRGRGRGGG--GGRGRGGGGGGGRG 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,409
Number of Sequences: 37544
Number of extensions: 327487
Number of successful extensions: 1515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3433095624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)