Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_K04
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    37   0.017
03_06_0212 + 32400982-32402055                                         33   0.28 
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798     30   2.0  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    29   4.6  
01_05_0407 - 21883009-21883950                                         29   6.1  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 320 ADLSKPPDPERWLPKYERTAY 258
           A+   PPDPERWLPK ER++Y
Sbjct: 589 ANPGPPPDPERWLPKRERSSY 609


>03_06_0212 + 32400982-32402055
          Length = 357

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 403 NNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVASS 224
           + LP L   ++       A A    RR+Q        K GC STSE    SD+ + VAS+
Sbjct: 108 DTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASA 167


>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
          Length = 273

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 159 AYPGDLCQESPGRSQADRERLAAQATAEEERQG 61
           A P D+   SP RS+  +ER+AA   A  E  G
Sbjct: 128 AEPADVVTGSPNRSETGQERVAADRPASSESSG 160


>02_05_0101 -
           25824093-25824112,25824734-25824842,25824927-25826429,
           25826596-25827333,25827712-25827919,25828455-25830409,
           25830868-25830960,25831044-25831100,25831189-25831272,
           25831345-25831437,25831622-25832053,25833593-25833933,
           25834663-25835215
          Length = 2061

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = -2

Query: 376 SWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVASSRVAKECPPL 197
           SW RRR R       SRR +         GGC    + R    E   V    V     P+
Sbjct: 126 SWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGGDARGRPTELAKVVDGAVTPSLVPV 185

Query: 196 PR 191
            R
Sbjct: 186 DR 187


>01_05_0407 - 21883009-21883950
          Length = 313

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -2

Query: 409 SRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVA 230
           SR  LP   + S   RR+R AS+   S R +++P      GG   +S     +  A   A
Sbjct: 53  SRKPLPSSSSSSKAARRERGASS---STRRRSAPGDEGSSGGVGGSSAKAAATAAAAAAA 109

Query: 229 SSRVAKECPPLP 194
           ++  A E  P P
Sbjct: 110 TATTAAEVSPTP 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,341
Number of Sequences: 37544
Number of extensions: 281453
Number of successful extensions: 937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)