Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_K04
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    39   0.005
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   1.8  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -1

Query: 467 LESSKWMMGAKVVKKTVQSKQEQSPGTPGSELGQXXXXXXXXXXKLPPNADLSKPPDPER 288
           LE S W++  +  ++  ++K  Q+     +   +           LP N + +  PDPER
Sbjct: 561 LEDSDWILYGEKYRQKKEAKSPQTAEIAATRKLKIATKRKRKIR-LPKNYNSAVTPDPER 619

Query: 287 WLPKYERTAY 258
           WLP+ ER+ Y
Sbjct: 620 WLPRQERSTY 629


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -2

Query: 391 ELPALSWDRRRKRNASATANSRRT---QTSPNLPIRKGGCQSTSELRTESDEALDVA-SS 224
           E  A +W RRR+        +R+T   + +  +P +K    S    R+ +DE L+ A SS
Sbjct: 247 EAEAPNWRRRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRS-TDENLETAKSS 305

Query: 223 RVAKECPP 200
           R+ K+  P
Sbjct: 306 RILKDSEP 313


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +3

Query: 597 PRXPXPPXRXXWXAAXXXPXXRXXPXXGYP--PPXXPPS 707
           PR P PP    W      P  R     G P  PP  PPS
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +3

Query: 597 PRXPXPPXRXXWXAAXXXPXXRXXPXXGYP--PPXXPPS 707
           PR P PP    W      P  R     G P  PP  PPS
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 442 ELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSEL 263
           E K S+++ K  +N   +    S  R+ K+N  +   S  T   P     + G Q+ +EL
Sbjct: 211 ESKKSKKI-KKKKNKKSKDKKKSNSRKNKKNKKSKGKSTSTSEPPTPNQPETGVQTANEL 269

Query: 262 RTESDEA 242
           R ++ E+
Sbjct: 270 RNDAPES 276


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = -2

Query: 436 KSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRT 257
           KSSR+  K S+ +  E  + S D R   + S       T +S       GG  STSE  +
Sbjct: 675 KSSRKRSKKSKKS-NETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSS 733

Query: 256 ESDEALDVASSRVAKE 209
            +  A  V++ + +K+
Sbjct: 734 SAPSAEQVSTPKKSKK 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,772
Number of Sequences: 27780
Number of extensions: 206300
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)