Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_K02
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 74 7e-13
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 32 2.6
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 32 2.6
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 32 2.6
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 32 2.6
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 31 6.1
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 31 6.1
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 30 8.1
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 30 8.1
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 73.7 bits (173), Expect = 7e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +1
Query: 484 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTSC*K 594
MIGRADIEGSKS+VAMNAW PQASYPCGNFS TSC K
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GGS+ + S KR+ R+RS SR S +++ R R+ G GS
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 391
Query: 17 KKKKK 3
KKKKK
Sbjct: 392 KKKKK 396
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GGS+ + S KR+ R+RS SR S +++ R R+ G GS
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 391
Query: 17 KKKKK 3
KKKKK
Sbjct: 392 KKKKK 396
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GGS+ + S KR+ R+RS SR S +++ R R+ G GS
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 391
Query: 17 KKKKK 3
KKKKK
Sbjct: 392 KKKKK 396
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GGS+ + S KR+ R+RS SR S +++ R R+ G GS
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 391
Query: 17 KKKKK 3
KKKKK
Sbjct: 392 KKKKK 396
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 30.7 bits (66), Expect = 6.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GS+ + S KR++R+RS SR S +++ R R+ G GS
Sbjct: 335 RSKAGSRSRSRSRSKSKDKRKSRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 391
Query: 17 KKKKK 3
KKKKK
Sbjct: 392 KKKKK 396
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 30.7 bits (66), Expect = 6.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -2
Query: 197 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 18
R GS+ + S KR++R+RS SR S +++ R R+ G GS
Sbjct: 260 RSKAGSRSRSRSRSKSKDKRKSRKRSREESRSRSRS---RSKSERSRKRGSKRDSKAGSS 316
Query: 17 KKKKK 3
KKKKK
Sbjct: 317 KKKKK 321
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 30.3 bits (65), Expect = 8.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 259 TPLRPKPA*PNPARICSLWSPESRE 185
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 30.3 bits (65), Expect = 8.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 259 TPLRPKPA*PNPARICSLWSPESRE 185
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,080,888
Number of Sequences: 237096
Number of extensions: 2023913
Number of successful extensions: 3846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3846
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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