Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_J24
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    92   9e-20
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    92   9e-20
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -3

Query: 290 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = -1

Query: 775 QKKAHIXXIXXXRCTXRGQSEMGPENXWRNLSLSILCLPKMK*LTALVSPRAKDTK-VSL 599
           QKKAH+  I     +   + E   E+  + + +      + + +  +   R K  +  + 
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTA 231

Query: 598 LVGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGXRNP 419
             GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 418 QK 413
            K
Sbjct: 291 AK 292



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -2

Query: 390 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -3

Query: 290 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = -1

Query: 775 QKKAHIXXIXXXRCTXRGQSEMGPENXWRNLSLSILCLPKMK*LTALVSPRAKDTK-VSL 599
           QKKAH+  I     +   + E   E+  + + +      + + +  +   R K  +  + 
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTA 231

Query: 598 LVGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGXRNP 419
             GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 418 QK 413
            K
Sbjct: 291 AK 292



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -2

Query: 390 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 494 SCWSERLSSPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMTCLRNPLH 348
           S +   L S Y   +  L  W +E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,835
Number of Sequences: 5004
Number of extensions: 61235
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)