Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_J24
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 118 7e-27
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 110 1e-24
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 29 5.5
07_01_0761 + 5849466-5850677 28 7.3
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 9.7
01_01_0084 - 636835-637965 28 9.7
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 118 bits (283), Expect = 7e-27
Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 8/201 (3%)
Frame = -3
Query: 692 EKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTXQGS*ESCLHWSLASF* 513
EK IPVD+VF +DEMID I +RW +LPRKT +G +
Sbjct: 203 EKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK----------- 251
Query: 512 GVVHCSSCWSE-RLSSPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMTCLRNPLHQWEV 336
V C W R+S +N + E K++ K+ K+ C + ++
Sbjct: 252 --VACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDI 309
Query: 335 SPI-------MVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 177
+P+ +VK + KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSS
Sbjct: 310 TPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSS 367
Query: 176 KFGHGRFQTPADKAAFMGTLK 114
KFGHGRFQT +K F G LK
Sbjct: 368 KFGHGRFQTTDEKQRFFGKLK 388
Score = 92.3 bits (219), Expect = 4e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -1
Query: 574 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 431
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 110 bits (265), Expect = 1e-24
Identities = 74/193 (38%), Positives = 100/193 (51%), Gaps = 8/193 (4%)
Frame = -3
Query: 692 EKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTXQGS*ESCLHWSLASF* 513
EK IPVD+VF +DEMID I +RW +LPRKT +G +
Sbjct: 203 EKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK----------- 251
Query: 512 GVVHCSSCWSE-RLSSPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMTCLRNPLHQWEV 336
V C W R+S +N + E K++ K+ K+ C + ++
Sbjct: 252 --VACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDI 309
Query: 335 SPI-------MVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 177
+P+ +VK + KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSS
Sbjct: 310 TPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSS 367
Query: 176 KFGHGRFQTPADK 138
KFGHGRFQT +K
Sbjct: 368 KFGHGRFQTTDEK 380
Score = 92.3 bits (219), Expect = 4e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -1
Query: 574 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 431
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 496 ARAGQKGYHHRTEMNKKIYRIGXRNPQ 416
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
>07_01_0761 + 5849466-5850677
Length = 403
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 607 VSLLVGTQRSYPVRHXKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHR 464
V+LLVG R V V+ + G HP SFT+ RA H+
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEHK 178
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 3 FFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 122
FFFFF +VY RH R R R R F ++ C
Sbjct: 103 FFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142
>01_01_0084 - 636835-637965
Length = 376
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +2
Query: 284 SNPXIITKSLFTSP*WGKPPIGVMDFSDKSYSVDALFLITLPSFLWIPXSNTIDFLVHFS 463
+NP ++T P + SD S S L T SFL S+T L F
Sbjct: 21 ANPIVLTPGAAPPPPTSSALPTQIPPSDWSLSPADPALATAASFLSTSLSSTSVSLPRFR 80
Query: 464 TVMITFLTSTSYSERHPRRMPS 529
+++ +FLT+ S S P P+
Sbjct: 81 SLLASFLTTLSNSLSLPAPSPN 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,354,019
Number of Sequences: 37544
Number of extensions: 408223
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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