Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_J21
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    29   0.73 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   6.8  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 498 RSHDGVLPT*ARMRLTVSKHVGC-FSSIRG 584
           RS  GVLP  ++M L  S H+ C  SSI+G
Sbjct: 798 RSSHGVLPVQSKMLLYNSNHISCPLSSIKG 827


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
 Frame = -2

Query: 487  DALEFSKQA--HLIRKQADTLYKTMKDLFTVP---DGLSFWEF---FSARVV-HFKKITA 335
            DA   S++A  HL+R+  D   KTM DL  +P   + +S  +     S +VV H  K   
Sbjct: 1729 DAQTVSQKAPNHLLRRSQDQNVKTMIDLGYIPTLTNAISEIDMNYPVSRKVVRHILKPLQ 1788

Query: 334  KLTSDELLEMVHEPLELSTPSPQSMQSAIEAANDEDTS 221
             LT + +      P  LS  +  SM     +++ E++S
Sbjct: 1789 LLTKEAIFLSQTNPEALSGAAQDSMGDQSLSSSSEESS 1826


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 574 LLKHPTCLETVKRMRAYVGNTPSWDLSEKDAL 479
           L +HPTC++ + R  A  G+  S+D  + D L
Sbjct: 373 LQRHPTCMQMLHRSSAESGD--SFDFDQPDPL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,262
Number of Sequences: 5004
Number of extensions: 39635
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)