Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_J19
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.     38   0.036
AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
          Length = 1134

 Score = 38.3 bits (85), Expect = 0.036
 Identities = 26/99 (26%), Positives = 29/99 (29%)
 Frame = +2

Query: 416  PPXXPXXXXXXPXPXXPPPXXAXRLXXPSXXXPXXAXSPPXXXXAXXRXXPPXSRXPXAX 595
            PP  P      P P  PPP    RL  P    P     PP          PP +R   A 
Sbjct: 957  PPPPPPPHPPLPPPPLPPPPLPLRLP-PLPPPPLPRPHPPPPPPLPPLLPPPQTRTLPAA 1015

Query: 596  XXXAXPPXXXPRXXXXXXTXPRXPXXXAXHSPXSVSRLR 712
                 PP           + PR P   A   P    + R
Sbjct: 1016 RTMRQPPPPRLALPRRRRSPPRPPSRPARRGPRPTPQAR 1054


>AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45135 fis, clone BRAWH3038252, highly  similar
           to Formin 1 isoform IV. ).
          Length = 844

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +2

Query: 356 PXRPXXXXXXAPXXXXXXXXPPXXPXXXXXXPXPXXPPPXXAXRLXXPSXXXPXXAXSPP 535
           P  P       P        PP  P      P P  PPP        P+   P  A  PP
Sbjct: 315 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPP 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,547,850
Number of Sequences: 237096
Number of extensions: 589378
Number of successful extensions: 1831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)