Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_J11
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 448 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 564
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 242 TGPPNDEITPPARTADIGAPA 180
           T P   EI P  +T D G PA
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPA 325


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 338  SAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGP 234
            S +V EG++S VAA         R+   GG    P
Sbjct: 1292 STRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRP 1326


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 338  SAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGP 234
            S +V EG++S VAA         R+   GG    P
Sbjct: 1288 STRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRP 1322


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 340 SQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH--ALHRKN 513
           S   LP     T T  T+  A    T +T+ T            HL + H H  +   ++
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQD 158

Query: 514 LHPPAEPEHRRIARHER 564
            H P + + ++  R ++
Sbjct: 159 HHRPYQQQQQQQQRQQQ 175


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 470 NTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSRRLQNVSIFLPRGN 631
           N+C      +F G       NPNT  S D    ++   +  RL++     P GN
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGN 150


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 726 AEILESTQFNTNNTTRSMTSGSSKQAN 646
           A +LE+ Q N+NN+T +  + ++  +N
Sbjct: 213 AVVLETCQRNSNNSTITAGNANTNASN 239


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 470 NTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSRRLQNVSIFLPRGN 631
           N+C      +F G       NPNT  S D    ++   +  RL++     P GN
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGN 150


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 5   FFFFLRLHSDLEW 43
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 417 RKIVVCVVAGKICCGK 370
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,131
Number of Sequences: 438
Number of extensions: 5124
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)