Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_I24
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 149 3e-37
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 100 5e-22
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 66 4e-12
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 62 1e-10
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 48 1e-06
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 26 7.0
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 7.0
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 149 bits (362), Expect = 3e-37
Identities = 68/149 (45%), Positives = 95/149 (63%)
Frame = -3
Query: 703 PXSDXXXXXXXXNXXXSNXXSSXWCTEXXVHXKAMRKVXEVRXXXXXXXXXQRXPXVSXG 524
P SD N S+ WC++ +H K +++ ++R Q+ S
Sbjct: 964 PESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESV- 1022
Query: 523 TXWDTVRKCICSAYFQQAARXKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELT 344
+ WD VR+ +CSAYF QAA KGIGEYV+ R+GMPCHLH TS+L+GLG PDYV+YHEL
Sbjct: 1023 SDWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELV 1082
Query: 343 MTAREYMHCVTAVDARWLAELGPMFFSVQ 257
+T++EYM+ VT+VD WLAE G +++SV+
Sbjct: 1083 LTSKEYMNIVTSVDPYWLAEFGGVYYSVK 1111
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 99.5 bits (237), Expect = 5e-22
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Frame = -3
Query: 703 PXSDXXXXXXXXNXXXSNXXSSXWCTEXXVHXKAMRKVXEVRXXXXXXXXXQRXPXVSXG 524
P SD N S WC E + + MR+ +VR R P VS G
Sbjct: 984 PESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCG 1043
Query: 523 TXWDTVRKCICSAYFQQAA-RXKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHEL 347
+ + + +CS YF A R G Y P ++HP+ LFG ++V+YHEL
Sbjct: 1044 RKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAA--EWVIYHEL 1101
Query: 346 TMTAREYMHCVTAVDARWLAELGPMFFSVQGDRQI 242
T++EYMH V+ V+ +WL E+ P FF Q+
Sbjct: 1102 IQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQV 1136
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 66.5 bits (155), Expect = 4e-12
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Frame = -3
Query: 703 PXSDXXXXXXXXNXXXSNXXSSXWCTEXXVHXKAMRKVXEVRXXXXXXXXXQRXPXVSXG 524
P D N S W E + K++ + +VR V+
Sbjct: 893 PGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNS 952
Query: 523 TX-WDTVRKCICSAYFQQAARXKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHE 350
+ D ++K I + YF AAR G+ Y ++ ++HP+S++ P ++Y E
Sbjct: 953 SESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEK--KPKVIIYFE 1010
Query: 349 LTMTAREYMHCVTAVDARWLAELGPMFFSVQGDRQIESRQ 230
L +T +EY +T + WL E+ P +F + +++ Q
Sbjct: 1011 LVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEELQKTQ 1050
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Frame = -3
Query: 703 PXSDXXXXXXXXNXXXSNXXSSXWCTEXXVHXKAMRKVXEVRXXXXXXXXXQRXPXVSXG 524
P D + S ++ WC + +A+ VR Q +S
Sbjct: 557 PDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTP 616
Query: 523 ----TXWDTVRKCICSAYFQQAARXKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVV 359
+ +R+ + S +F Q A+ G+ YV + LHP+ GL +P++VV
Sbjct: 617 FDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVV 673
Query: 358 YHELTMTAREYMHCVTAVDARWLAELGPMFFSV 260
Y+E +T + ++ VTA+ WL EL P ++ +
Sbjct: 674 YNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDL 706
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Frame = -3
Query: 655 SNXXSSXWCTEXXVHXKAMRKVXEVRXXXXXXXXXQRXPX-VSXGTXWDTVRKCICSAYF 479
S+ WC++ ++ +A++ + ++R S + + S Y
Sbjct: 586 SHDSRKQWCSQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYI 645
Query: 478 QQAARXKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDA 299
A G Y +HP+S+LFG + ++YHEL T + Y+ V+++ +
Sbjct: 646 TNTALLHPDGSYRTIIGNQTISIHPSSSLFGK--KVEAIMYHELVFTTKSYVRGVSSIRS 703
Query: 298 RWLAELGPMFFS 263
WL + P + +
Sbjct: 704 NWLNAVAPHYLA 715
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 412 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 314
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 218 ASLRLSRFDLPVSLXGEEHGPQLGQPARVHGGDAVHV 328
A+L FD+P L G G +LG+ HG A V
Sbjct: 142 AALGFITFDVPGVLVGSAAGAKLGRIRDTHGKSAYSV 178
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 496 ICSAYFQQAARXKGIGEYVNCRTGMPCHLHPTSALFGLGCSP 371
IC + FQ A +GI E +NC + H + + +G SP
Sbjct: 1120 ICLSIFQ-CADYRGINEILNCWESIIKTTHENAIISPVGSSP 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,355
Number of Sequences: 5004
Number of extensions: 28117
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -