Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_I19
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   149   2e-36
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.2  
11_04_0354 + 16697571-16700256,16700335-16700759                       28   9.5  
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033     28   9.5  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  149 bits (361), Expect = 2e-36
 Identities = 71/119 (59%), Positives = 85/119 (71%)
 Frame = -2

Query: 488 SEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPD 309
           SE MW +EARNAAI N YF  +INRVG E FPN FTS DGKP H D G FYGSS+F  PD
Sbjct: 291 SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPD 350

Query: 308 GVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 132
               P LSR RDGL+I+ +DLNL RQI+D+  + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 351 ASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = -1

Query: 642 NTGHPVFATRYGKIAVNXXFGRHHVLNWMMFGQNGAEIVFNPSATI 505
           NTGHPVF T YGKI VN  +GRHH LNW+ FG NGAEIVFNPSAT+
Sbjct: 242 NTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV 287



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -3

Query: 721 GXXIGKHXKNHIPRVGD 671
           G  IG H KNHIPRVGD
Sbjct: 215 GNIIGIHRKNHIPRVGD 231


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 267 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 443
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 198 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 314
           LG V+ TSVS+LS Q+Q+       +SG    G  N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369


>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
          Length = 143

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 258 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 145
           G+G EP+  D ++ L ++D  PG   E  Q S+ AGL+
Sbjct: 89  GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,362
Number of Sequences: 37544
Number of extensions: 354584
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)