Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_I09
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   220   2e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   220   2e-58
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.81 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   7.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   10.0 

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  220 bits (538), Expect = 2e-58
 Identities = 106/161 (65%), Positives = 124/161 (77%)
 Frame = -2

Query: 693 GTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 514
           GT+R  PRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 513 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 334
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 333 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 211
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -3

Query: 815 EWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 720
           EWAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 727 KGKGYKGVTSRWHTKKLP 674
           +GKG +G T+RW TK+LP
Sbjct: 222 RGKGNEGTTARWGTKRLP 239


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  220 bits (538), Expect = 2e-58
 Identities = 106/161 (65%), Positives = 124/161 (77%)
 Frame = -2

Query: 693 GTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 514
           GT+R  PRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 513 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 334
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 333 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 211
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -3

Query: 815 EWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 720
           EWAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 727 KGKGYKGVTSRWHTKKLP 674
           +GKG +G T+RW TK+LP
Sbjct: 222 RGKGNEGTTARWGTKRLP 239


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 502 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 600
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 469 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 591
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 232 HGYTQEGSYSRRSCGYHNPS 173
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 454 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 582
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 85  LEHMGPFFFFFFALSNVYF 141
           LEH+   FFF+F L +++F
Sbjct: 349 LEHLHQSFFFYFILDHLHF 367


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 514 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 639
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,154
Number of Sequences: 5004
Number of extensions: 73885
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)