Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_I03
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1022 - 21778315-21779007                                         30   2.7  
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213...    28   8.1  

>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 371 PXRLPXTXPXXHXXRGPXXAPXPXXXXP-XXPXXSPPPPXR 490
           P   P T P  H    P   P P    P   P  +PPPP R
Sbjct: 98  PAPAPSTTPGGHGGVPPYYPPPPVTPTPYYYPSPAPPPPSR 138


>05_07_0280 -
           28920864-28920971,28921076-28921175,28921267-28921394,
           28922013-28922180,28922280-28922395,28922584-28922736,
           28922904-28923047,28923401-28924133
          Length = 549

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 413 RGPXXAPXPXXXXPXXPXXSPPPPXR 490
           R P   P P    P  P   PPPP R
Sbjct: 34  RAPKPKPKPQPPPPQQPRSQPPPPPR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,581
Number of Sequences: 37544
Number of extensions: 122170
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)