Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_I01
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.73 
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    28   1.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.2  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 391  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRXRNPNTAASP-DTNA 567
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 568  P 570
            P
Sbjct: 1703 P 1703



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
 Frame = +1

Query: 376 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRX 528
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 529 RNPNTAAS 552
             P T++S
Sbjct: 381 STPITSSS 388


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 321 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGST 428
           PSA+ + S  + PP ++L+  ++TS HA  N    T
Sbjct: 213 PSASASISDSLPPPYQVLSVPSVTSTHAFSNNANQT 248


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 359  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 502
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 346 KTFYHHANFLPQQIL 390
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 361 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 477
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,260
Number of Sequences: 5004
Number of extensions: 49042
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)