Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_I01
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0227 - 23449579-23450459,23450574-23450691                       31   1.3  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    31   1.3  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    29   3.1  
11_05_0086 + 18964493-18965737,18965896-18966360                       29   4.1  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     29   4.1  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    29   4.1  
03_01_0404 + 3138624-3140096                                           29   5.4  
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337...    28   7.1  
09_06_0239 - 21794691-21795986                                         28   9.4  
08_02_0707 - 20212190-20214592                                         28   9.4  
01_05_0230 + 19543410-19543722,19544165-19544238                       28   9.4  

>05_05_0227 - 23449579-23450459,23450574-23450691
          Length = 332

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 271 RLDGXGGRPTGPPNDEITPPARTADIGAP 185
           R DG GGRP+ P   E T P R    GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 393 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPXEPEHRR 548
           S   NY+   S   +R   H  E +R H S  HKH L R +     EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 TEEANREHLSSTHKHALHRKNLHPPXEPEHRRIARHXRTGR 575
           + E   EH SS  +H  HR + H   + EHR   RH R  R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 125 PATAQSPTRRRTLAQVQPERGGSNIGSP 208
           PA A SPTRRR L  + P    SN GSP
Sbjct: 31  PAAAPSPTRRRRL--LAPLAAASNSGSP 56


>11_05_0086 + 18964493-18965737,18965896-18966360
          Length = 569

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 241 GPPNDEITPPARTADIGAPALRLHLR*GAPPRRRL 137
           GPP D   PP  T  + A  L  H R   PP R L
Sbjct: 82  GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 343 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 474
           H+ F    +FLP +I         L+VPP LH V P    P A+
Sbjct: 75  HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 291 TGWAATAEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANR 470
           TG A+++  + SA  A  +      +LLT+   TSH +  N T   S     SH + + R
Sbjct: 680 TGSASSSPATASAAAASKKP-----RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFR 734

Query: 471 EHL 479
           E L
Sbjct: 735 ESL 737


>03_01_0404 + 3138624-3140096
          Length = 490

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/74 (27%), Positives = 26/74 (35%)
 Frame = +3

Query: 321 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 500
           PSA  A +   LP   LLT   L   H + +     SL R  S    +    L +     
Sbjct: 24  PSAAAAPTAPALPVQALLTTAGLLPRHPDLSLVALNSLLRVLSRRASSPAHPLLALRLLL 83

Query: 501 LHRKNLHPPXEPEH 542
           L      P   P+H
Sbjct: 84  LMLSPASPLPPPDH 97


>12_02_0982 -
           25031778-25032122,25032388-25032534,25032693-25033718,
           25033758-25034227,25034393-25034471
          Length = 688

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -3

Query: 328 AEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPALRLHL 167
           A+G    V  HP RE+  D  D   G P    ++     A   D   P + + L
Sbjct: 228 ADGHDLGVVVHPWREDDDDDSDDHDGGPDDAEDEAAVQDAGVVDDSGPGVAVEL 281


>09_06_0239 - 21794691-21795986
          Length = 431

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 312 EVSPSATC-ADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 458
           +  P  +C A + D+  P K  T  NLTS   NY ++   S T  Y  TE
Sbjct: 115 QCQPCLSCVAQAGDMYDPNKTETYANLTSSSYNYTYS-KQSFTSGYFATE 163


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 393 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPXEPEHRRIARH 560
           SHH +++   S   +   S TE + +E+ S  H H  H  + H   E  H++   H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603


>01_05_0230 + 19543410-19543722,19544165-19544238
          Length = 128

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = -3

Query: 403 AWWLVRFVAVRSLHGGKMSCESAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDE 224
           A WL  F+  R L            AEGE    AAHP+R  R  R      RP+ PP   
Sbjct: 16  ASWLPLFL--RRLSSSSRPTAEESRAEGEEREGAAHPLR-LRCRR------RPSPPPAPP 66

Query: 223 ITPP 212
            TPP
Sbjct: 67  STPP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,839,766
Number of Sequences: 37544
Number of extensions: 422343
Number of successful extensions: 1399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)