Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_H13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.7  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.0  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.0  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   4.0  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.0  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.2  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.2  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
 Frame = +1

Query: 133 PRHRTELYPDLRSRDSRVKK-----KTDSI-DLRDPNGLRRRVSRFECETRLVKSHCLEP 294
           P  R  L P+ R    RV       +T +I  ++DP  L  R  + EC T++V ++ LE 
Sbjct: 62  PTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLSDRRYQQECATQVV-NYLLES 120

Query: 295 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFXXXXXXXXXXTKCPK 441
             S+   ++     S R  +A+    +N  D +F          T C K
Sbjct: 121 GFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEEDVTTCLK 169


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 479 AIVILLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEAS 345
           A+V+    E  +SF  L + +  A G +K+P A + L  S+ E S
Sbjct: 145 AVVLKGGTESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 25/115 (21%), Positives = 48/115 (41%)
 Frame = -1

Query: 407 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 228
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 227 PFGSRRSMLSVFFLTRESRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 63
                R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 678 TQQG*LAXGSQAFIATLLFDPSMSGSSYHCEAKFAKR 568
           T Q  L   SQAF++T    P+ S  ++H EA   +R
Sbjct: 5   TSQRPLTPLSQAFLSTNTLSPASSPLTFHSEAASLRR 41


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 70  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDSRVKKKTDSIDLRDPNGLRRRVSR 249
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 119 VDDFRSWRGVVLGRAASCCDLLRLS 45
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 49  SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDSRVKKKTDSID 210
           +++  + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,076
Number of Sequences: 5004
Number of extensions: 53006
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)