Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_H08
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    29   3.5  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    28   8.0  

>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 328 LPDSARLASALEAFRHNPADGSFAPPTARPSA*TKCPKLRFLS 456
           LPD + ++S+L    HNP   +++ P       TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/116 (23%), Positives = 48/116 (41%)
 Frame = +1

Query: 85   STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 264
            S T R+ER+        R + E   + + ++AR + K+ +  + +  G   R    E   
Sbjct: 1217 SITAREERRIQQAEEMFRRQEE---EGKRKEARRRSKSVTPGVLEAAGTAAREDAPEAS- 1272

Query: 265  RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPTARPSA*TK 432
              + +    PP SR S    + P ++  A+  E    N    S  PP + P++  K
Sbjct: 1273 --IPAPAPSPPASRRSVSRTTQPSTSSFATPTEPPAKNKRMRSVVPPKSEPASSAK 1326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,517
Number of Sequences: 27780
Number of extensions: 370325
Number of successful extensions: 1123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)