Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_H07
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    31   0.18 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    30   0.31 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.96 
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    28   1.7  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    26   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   9.0  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    25   9.0  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   9.0  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 439 LLDDAEGLAHLLDATQVPIVXVAVRPYGHV 528
           LL   +G  HL    QVPI+ +A++ YGH+
Sbjct: 192 LLPLKKGAFHLAVQAQVPIIPIAIQTYGHL 221


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 124 DDGHDVRQHGVPADLLQRRQVREARR-LDLA-SVRLGASVGDEVDPELPL 267
           +DG    QH   ++ L+R++VR  RR  DL+   +LG+S G      LPL
Sbjct: 52  EDGDTSSQHEDSSEELKRQEVRGMRRHSDLSIDAKLGSSEGSTASSALPL 101


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -3

Query: 466 APVPPHH-RAVPQRHAPRGGQDRRRQAHPA----IPGGDEDVHGGADPPLQAVHAGLPGA 302
           AP+PP H  AVP   A     D + + HP+          D  G +  P  A  AG P  
Sbjct: 266 APIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPAT 325

Query: 301 A 299
           +
Sbjct: 326 S 326


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 317 CVNSLKWWISASMDVFISSRDGGV 388
           C+N +   I+AS +VF   RDGG+
Sbjct: 348 CLNCISLLIAASREVFAFCRDGGI 371


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 121 PDDGHDVRQHGVPADLLQRRQVREARRLDLASVRLGASVGDEVDPELPLG-SLHGGVGGA 297
           PD+  DV    V    +Q+++VREA  L L    L   +G  +DP  P G  L+G  G  
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIG--IDP--PRGVLLYGPPGTG 180

Query: 298 RRHLV 312
           +  LV
Sbjct: 181 KTMLV 185


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 472 GDAPVPPHHRAVPQRHAPRGGQDRRRQAHP 383
           G  P+PP  R+ P    PR      RQ  P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 92  RSPRKTTSRVPMMATMSASMEFLPIFSSAARCAKP 196
           +SP+ + SR P  +  S   + L +F+S A  A+P
Sbjct: 677 QSPQSSLSRAPSTSKKSHFEDILGLFASPAPSAQP 711


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 246 LVSDGGSKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAI 127
           L+   G +PYRC        +L AL K+ R +   D+V +
Sbjct: 51  LIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTL 90


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 74  LQRPTGRSPRKTTSRVPMMATMSASMEFLPIFSSAARCAKPGALILHLYG 223
           LQR  GR   +  ++   +A ++A++E+L +     R  KP  ++LH  G
Sbjct: 284 LQRRPGRCLSENEAKF-YIAEVTAALEYLHLMGFIYRDLKPENILLHESG 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,306
Number of Sequences: 5004
Number of extensions: 37421
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)