Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_H07
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily ass... 237 6e-63
Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical pr... 236 1e-62
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 34 0.096
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 31 0.68
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 31 0.90
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 30 1.6
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 30 2.1
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 29 2.7
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 29 3.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.6
Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.8
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.8
AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein. 29 4.8
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 28 6.3
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 28 6.3
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 8.4
AC084154-2|ABO16460.1| 272|Caenorhabditis elegans Hypothetical ... 28 8.4
>U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily
assigned gene nameprotein 99 protein.
Length = 474
Score = 237 bits (580), Expect = 6e-63
Identities = 103/149 (69%), Positives = 124/149 (83%)
Frame = -1
Query: 561 QPXDAYPFVEFDVPIGTHGDXYDRYLCRVEEMRQSLRIIEQCLNDMPPGEVKTDDAKLTP 382
+P DAY +EFDVPIGT GD YDRYLCRVEEMRQSL I+ QCLN MP GE+K+DD K+ P
Sbjct: 317 EPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIVHQCLNKMPTGEIKSDDHKVVP 376
Query: 381 PSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGIYLVSDGGSKPYRCKIK 202
P R EMK +ME+LIHHFK FT+G+QVPPG+TY +EAPKGEFG+YLV+DG KPYRC I+
Sbjct: 377 PKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIR 436
Query: 201 APGFAHLAALEKIGRNSMLADIVAIIGTL 115
APGFAHLAA+ + S++ADIVA+IGT+
Sbjct: 437 APGFAHLAAIHDVCYMSLIADIVAVIGTM 465
>Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical
protein K09A9.5 protein.
Length = 482
Score = 236 bits (578), Expect = 1e-62
Identities = 102/149 (68%), Positives = 123/149 (82%)
Frame = -1
Query: 561 QPXDAYPFVEFDVPIGTHGDXYDRYLCRVEEMRQSLRIIEQCLNDMPPGEVKTDDAKLTP 382
+P DAY +EFDVPIGT GD YDRYLCR+EEMRQSL I+ QCLN MP GE+K DD K+ P
Sbjct: 325 EPYDAYADMEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMPAGEIKVDDHKVVP 384
Query: 381 PSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGIYLVSDGGSKPYRCKIK 202
P R EMK +ME+LIHHFK FT+G+QVPPG+TY +EAPKGEFG+YLV+DG KPYRC I+
Sbjct: 385 PKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIR 444
Query: 201 APGFAHLAALEKIGRNSMLADIVAIIGTL 115
APGFAHLAA+ + S++ADIVA+IGT+
Sbjct: 445 APGFAHLAAIHDVCYMSLIADIVAVIGTM 473
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 34.3 bits (75), Expect = 0.096
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 472 GDAPVPPHHRAVPQRHAP-RGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAGLPGAAG 296
GDA P A AP +GGQ R PA G + GG P Q+ AG PG AG
Sbjct: 173 GDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/99 (29%), Positives = 33/99 (33%)
Frame = -3
Query: 466 APVPPHHRAVPQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAGLPGAAGLHL 287
AP P P P G + P G + G A P QA G PGA G
Sbjct: 135 APGPAGAPGAPGPQGPSGAPGQDAVGEGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGG 194
Query: 286 HRRGGSQGGVRDLPRLRRRLQAVQMQDQGAGLRAPGGAG 170
R G+ G P + Q G APG AG
Sbjct: 195 QRSRGTPGPA-GAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 463 PVPPHHRAVPQRHAPRGGQDRRRQAHPAIPG--GDEDVHGGADPPLQAVHAGLPGAAG 296
P PP + R PRG Q R + PA+PG G G + P AG PG+ G
Sbjct: 185 PGPPGNNGEGGRDGPRGEQGRPAISTPALPGDPGAPGEPGPSGLPGDQGQAGRPGSDG 242
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 31.5 bits (68), Expect = 0.68
Identities = 29/99 (29%), Positives = 33/99 (33%)
Frame = -3
Query: 466 APVPPHHRAVPQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAGLPGAAGLHL 287
AP P P P G + P G + G A P QA G PGA G
Sbjct: 135 APGPAGAPGAPGPQGPSGAPGQDAVGGGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGG 194
Query: 286 HRRGGSQGGVRDLPRLRRRLQAVQMQDQGAGLRAPGGAG 170
R G+ G P + Q G APG AG
Sbjct: 195 QRSRGTP-GPSGAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 432 NDMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEA 271
N+ PP E +D K+ +MK + +H K+ +GY +PP TYTA EA
Sbjct: 154 NEQPP-EPGSDPRKIWAFKAAKMKCQAISKLHQDKI--KGY-MPPNCTYTAYEA 203
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Frame = -3
Query: 436 PQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADP------PLQAVHAGLPGAAGLHLHRRG 275
P R PRG PA P GD+ HG P P + AG PGAAG
Sbjct: 140 PGRPGPRGPSGL---VGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGPPGP 196
Query: 274 GSQGGVRDLPRLRRRLQAVQMQDQGAGLRAPGGAGED 164
+ G P R + PGGAGED
Sbjct: 197 RGEPGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAGED 233
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -3
Query: 472 GDAPVP--PHHRAVPQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAGLPGAA 299
GDA P P H P RGGQ R P+ G + GG P Q+ +G PG
Sbjct: 183 GDAGAPGQPGHPGSPGNPG-RGGQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQP 241
Query: 298 G 296
G
Sbjct: 242 G 242
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = -3
Query: 421 PRGGQDRRRQAHPA---IPGGDEDVHGG---ADPPLQAVHAGL---PGAAGLHLHRRGGS 269
P GG R P IPG D GG D P + G+ PG + +R G+
Sbjct: 573 PPGGDSRGVDRPPGGGGIPGVDRPPGGGRRGVDRPPGSGMPGIDRPPGGDRMGDKQRRGA 632
Query: 268 QGGVRDLPRLRRR 230
+GGV++ R RRR
Sbjct: 633 RGGVKERERKRRR 645
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Frame = -3
Query: 385 PAIPGGDEDVHGGADP------PLQAVHAGLPGAAGLHLHRRGGSQGGVRDLPRLRRRLQ 224
PA P GD+ HG P P + AG PGAAG + G P R
Sbjct: 154 PAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAG 213
Query: 223 AVQMQDQGAGLRAPGGAGED 164
+ PGGAGED
Sbjct: 214 PPGPRGPPGPEGNPGGAGED 233
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = -3
Query: 451 HHRAVPQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAG-LPGAAGLHLHRRG 275
H R + H+PRG R P PG HG PP H G P G H H
Sbjct: 366 HGRHGSRSHSPRGHGHGGRHGPPHCPGR----HGHHGPPHHHHHDGRSPSRHGHHHHHHH 421
Query: 274 G 272
G
Sbjct: 422 G 422
>Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical
protein C26H9A.1 protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 540 FVEFDVPIGTHGDXYDRYLCRVEEMRQSLRIIEQCLNDMPPG-EVKT-DDAKLTPPSREE 367
FV+ + + + + + + R EEM + LR +E+ + PG + K+ D L+ P++ E
Sbjct: 81 FVDLNAKMSLYSRTFVKQMRRCEEMERKLRFLEKQVITCKPGLDPKSIDYTDLSAPTQAE 140
Query: 366 M 364
M
Sbjct: 141 M 141
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 480 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 328
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 887 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 938
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 480 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 328
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 873 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 924
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 480 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 328
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 873 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 924
>AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 540 FVEFDVPIGTHGDXYDRYLCRVEEMRQSLRIIEQCLNDMPPG-EVKT-DDAKLTPPSREE 367
FV+ + + + + + + R EEM + LR +E+ + PG + K+ D L+ P++ E
Sbjct: 81 FVDLNAKMSLYSRTFVKQMRRCEEMERKLRFLEKQVITCKPGLDPKSIDYTDLSAPTQAE 140
Query: 366 M 364
M
Sbjct: 141 M 141
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 352 GGADPPLQA--VHAGLPGAAGLHLHRRGGSQGGVRDLPRLRRRLQA 221
G +PP A + +G PG + + + GS GG++ P+ ++ +Q+
Sbjct: 445 GSMNPPYLAPPMQSGRPGMPSISVQQATGSYGGMQQQPQQQQPMQS 490
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 495 DRYLCRVEEMRQSLRIIEQCLNDMPPGEVKTDDAKLTPPSREEMKT 358
D L R+S RI C + PG KLT SR+ +T
Sbjct: 610 DAVLLLTPRRRRSTRIQNSCASAAAPGAASLSTEKLTQSSRKRART 655
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -3
Query: 463 PVPPHHRAVPQRHAPRGGQDRRRQAHPAIPGGDEDVHGGADPPLQAVHAGLPGAAGLHLH 284
P P P P G + Q P G G A P G PGA G H
Sbjct: 138 PGPAGEAGAPGPAGPDGQPGQDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPGQDGH 197
Query: 283 RRGGSQG 263
R G+ G
Sbjct: 198 RSTGTPG 204
>AC084154-2|ABO16460.1| 272|Caenorhabditis elegans Hypothetical
protein Y22D7AR.5 protein.
Length = 272
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 365 ISSRDGGVSLASSVLTSPGGMSLRHCSMMRRDWRISSTRHK--YLSXQSPCVPM--GTSN 532
IS D G+S SV T ++ + R R +STRH Y++ +P PM T N
Sbjct: 187 ISGDDSGLSSGLSVETKQDLTQVKISAFSGRQHRTASTRHSLAYIT-ATPAEPMTSSTCN 245
Query: 533 STKG*ASXGXXC 568
K AS C
Sbjct: 246 FLKTLASMSPKC 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,942
Number of Sequences: 27780
Number of extensions: 255708
Number of successful extensions: 1087
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -