Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_H02
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   148   1e-36
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   146   2e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   4e-04
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  148 bits (358), Expect = 1e-36
 Identities = 73/125 (58%), Positives = 83/125 (66%)
 Frame = -3

Query: 736 GXXXVXXXPXXTGXTXIAGRFTXXXFXNQIQXAFREPXXLIVLDPAQDHQPIXEASYVNI 557
           G   V      TG T IAGRFT   F N I   +REP  ++V DP  D Q I EAS+VNI
Sbjct: 85  GHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNI 144

Query: 556 PVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLF 377
           PVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+
Sbjct: 145 PVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLY 204

Query: 376 FYRXP 362
           FYR P
Sbjct: 205 FYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  146 bits (355), Expect = 2e-36
 Identities = 73/127 (57%), Positives = 83/127 (65%)
 Frame = -3

Query: 742 PXGXXXVXXXPXXTGXTXIAGRFTXXXFXNQIQXAFREPXXLIVLDPAQDHQPIXEASYV 563
           P G   V      TG T IAGRFT   F N I   +REP  +IV DP  D Q I EAS+V
Sbjct: 84  PYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFV 143

Query: 562 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 383
           NIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ D
Sbjct: 144 NIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPD 203

Query: 382 LFFYRXP 362
           L+FYR P
Sbjct: 204 LYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 628 PXXLIVLDPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 449
           P  +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 448 AR 443
           +R
Sbjct: 240 SR 241


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 426 VVCFPVTSAGMLWLICSSTVXPEESEKD 343
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 550 IALCNTDSPLRFVDIAIPCNTKSSHSI 470
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 472 IGLMWWLLAREVLRLRGVLPRDQRWD 395
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,416
Number of Sequences: 5004
Number of extensions: 43379
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)