Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_H02
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   146   2e-35
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   146   2e-35
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.0  
06_03_0543 + 21967787-21970261                                         29   5.2  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   6.9  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  146 bits (354), Expect = 2e-35
 Identities = 68/127 (53%), Positives = 83/127 (65%)
 Frame = -3

Query: 742 PXGXXXVXXXPXXTGXTXIAGRFTXXXFXNQIQXAFREPXXLIVLDPAQDHQPIXEASYV 563
           P G   V      TG   IAGR T   F NQ+Q +F EP  LI+ DP  DHQPI E++  
Sbjct: 85  PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALG 144

Query: 562 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 383
           NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204

Query: 382 LFFYRXP 362
           LFFYR P
Sbjct: 205 LFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  146 bits (354), Expect = 2e-35
 Identities = 68/127 (53%), Positives = 84/127 (66%)
 Frame = -3

Query: 742 PXGXXXVXXXPXXTGXTXIAGRFTXXXFXNQIQXAFREPXXLIVLDPAQDHQPIXEASYV 563
           P G   V      TG   IAGR T   F NQ+Q +F EP  LI+ DP  DHQPI E++  
Sbjct: 85  PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALG 144

Query: 562 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 383
           NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204

Query: 382 LFFYRXP 362
           LFFYR P
Sbjct: 205 LFFYRDP 211


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 214 TRCSSCFWSTPCSRRMVCPGTR*VEHN 134
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 214 TRCSSCFWSTPCSRRMVCPGTR 149
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 466 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 377
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 214 TRCSSCFWSTPCSRRMVCPGTR*VEHN 134
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,285
Number of Sequences: 37544
Number of extensions: 311219
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)