Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_G21
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   3.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.1  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 395 SLPGRNAIHRRPGXXXXXXXXXXXXXKMRTASQSAAADAPSRPP 526
           SLP RN + + PG             K    SQ A  D P  PP
Sbjct: 7   SLPTRNELVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPP 50


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 361 LVFRGTPLGQNQPAGSERDTPPTGLLFNSMFGDD 462
           L+  GT L  ++P  SER    T LL NS+ GDD
Sbjct: 82  LLTSGTFLPNSRPYLSERVRKHTHLLSNSITGDD 115


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 417  YTADRVALQQYVXXXXXXXKCGPHRSPQPPTRRPVLLVPARXSDGXVRRXLNPLRSPVTI 596
            Y+A    L  ++          P  +P PP   PV     + +    +  L+P RS VTI
Sbjct: 921  YSAYDSGLDNWIQFCLEKDGEAPKEAPPPPRSEPVSTT-TKLAKRITQPSLSPARSTVTI 979

Query: 597  T 599
            T
Sbjct: 980  T 980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,394
Number of Sequences: 5004
Number of extensions: 40562
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)