Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_G14
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.3
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 28 1.7
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 6.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 6.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.8
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.0
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 9.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.0
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 102 RNMARIYQLAVGLGGRERSLNRCREKSSFVILKNRPDVVVQYG 230
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -2
Query: 651 YTNHPRXNIHFHQSPDAVXEGVRAGXKPPLSSEAPSAYLTPSSLGMXKGVSPPY-FQVND 475
+ N P + F + GV PP SS+ P Y+ KG+S Y VND
Sbjct: 14 WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 467 KLRALLVVIPRILRSPPPTHPLIEDV 390
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 356 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVL 222
K K+ D V K + +S T+ +V + YF PF+ V+
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVV 652
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 144 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 46
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 470 DSSFT*K*GGETPLXMPSDEGVRYADGASDDNGGFXPARTP 592
+SSF G TPL D G YAD A+ N PA TP
Sbjct: 160 NSSFVGNSGSGTPLD--GDSGSFYADSANLTNREPYPAWTP 198
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 332 LVTHKELALKVSSIIGTRVYVFDPSCY 252
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 91 KESEETWRGSTNWR*VSEEG 150
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 472 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 386
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 191 NKTALLSASIQASLPSSETYRQLVDPRHVSSDSFGVY 81
N+ LL I S +SET Q D ++++ + G+Y
Sbjct: 589 NEKELLPEGIPTSHNNSETQAQTADVSNIAASADGIY 625
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 117 IYQLAVGLGGRERSLNRCREKSSFVILKNRPDVV 218
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,721
Number of Sequences: 5004
Number of extensions: 45754
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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