Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_G10
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 284 1e-77
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 280 2e-76
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 107 1e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.19
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.0
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 9.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.2
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 284 bits (696), Expect = 1e-77
Identities = 138/212 (65%), Positives = 160/212 (75%), Gaps = 2/212 (0%)
Frame = -2
Query: 779 IGXXXSSIXXXLKXDGAXNXXLTEFQXNLVPYPP--YPXSHWSRTRQSSLPRRPTMNSFP 606
I SSI L+ G+ N L EFQ NLVPYP +P +S ++ + NS
Sbjct: 235 IAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHES-NSVQ 293
Query: 605 SPRSQTHASSPPNQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWC 426
+Q P NQMVKCDPR G+YMA C+LYRGDV+PRDV AA+ +IK++RTIQFVDWC
Sbjct: 294 EITNQCF--EPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWC 351
Query: 425 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 246
PTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 352 PTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 411
Query: 245 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 150
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 412 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 280 bits (686), Expect = 2e-76
Identities = 136/212 (64%), Positives = 159/212 (75%), Gaps = 2/212 (0%)
Frame = -2
Query: 779 IGXXXSSIXXXLKXDGAXNXXLTEFQXNLVPYPP--YPXSHWSRTRQSSLPRRPTMNSFP 606
I SSI L+ +G+ N L EFQ NLVPYP +P ++ ++ + NS
Sbjct: 231 IAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHES-NSVQ 289
Query: 605 SPRSQTHASSPPNQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWC 426
+Q P NQMVKCDPR G+YMA C+LYRGDV+PRDV AA+ TIK KRTIQFVDWC
Sbjct: 290 EITNQCF--EPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWC 347
Query: 425 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 246
PTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407
Query: 245 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 150
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 107 bits (258), Expect = 1e-24
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 5/209 (2%)
Frame = -2
Query: 764 SSIXXXLKXDGAXNXXLTEFQXNLVPYPPYPXSHWSRTRQSSLPR--RPTMNSFPSPRSQ 591
+ + + G N L + N+VP+P H+ + L + + P
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRL---HFFMVGFAPLAAIGSSSFQAVSVPELT 290
Query: 590 THASSPPNQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFK 411
N MV DPRHG+Y+ L+RG V ++V+ I +++TK + FV+W P
Sbjct: 291 QQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVL 350
Query: 410 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 231
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GEG
Sbjct: 351 KAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEG 402
Query: 230 MEEGEFSEAR---EDLAALEKDYEEVGMD 153
M+E EF+EA DL + + Y+E G+D
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 3e-10
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Frame = -2
Query: 575 PPNQMVKCDP-RHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 399
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 398 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 222
+ P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 221 --GEFSEAREDLAALEKDYE 168
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 508 VVTSYPGM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 374
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 508 VVTSYPGM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 374
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 683 PPYPXSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPNQMVKCDPRH 540
P P S + +LP P PS + ++ S+ PNQ +K P+H
Sbjct: 217 PISPPSDFFSVHSHNLPNAP-----PSIPANSNNSASPNQRIKASPKH 259
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 304 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 131
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 130 EPKSTK 113
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 683 PPYPXSHWS-RTRQSSLPRRPTMNSFPSPRSQTHASSPPNQMVK 555
PP P ++ S R+ +S + +S PSP S + A PNQ +K
Sbjct: 282 PPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAYGDPNQHLK 325
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 472 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 386
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 491 WVRRHHGTAYSKPCTCHDGG 550
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 486 IPG-YDVTTVQHTASHVLAMTGVAFHH 563
+PG +D+ H H+ + GVAFH+
Sbjct: 398 LPGKFDIIGNSHQIWHIAIIVGVAFHY 424
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 609 SVAEITNACFEPAKPDGEMRPPSWQV 532
SV ++T ACFEP+ ++ P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 647 QSSLPRRPTMNSFPSPRSQTHASSPP 570
+ SLPRRP+ +P S T ++ PP
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPP 763
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 475 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 380
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 553 ATPVMASTWLAVCCTVVTSYPGM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 374
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,724
Number of Sequences: 5004
Number of extensions: 62392
Number of successful extensions: 240
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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