Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_G08
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   123   2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   0.001
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -3

Query: 631 FREXRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
           +RE RL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
           +LLAREVLR+RG L R   WDV+ DL+FYR P
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 26/48 (54%), Positives = 29/48 (60%)
 Frame = -2

Query: 773 EXPXXVXVXSSRPFGQRAVXXFXXHTRXTPIAGRFTPGAFTNQIQAAF 630
           E P  V V S+R +G RAV  F  HT  T IAGRFTPG FTN I   +
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  123 bits (297), Expect = 2e-29
 Identities = 59/92 (64%), Positives = 69/92 (75%)
 Frame = -3

Query: 631 FREXRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
           +RE RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
           +LLAREVLRLRG + R   W+V+ DL+FYR P
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/48 (58%), Positives = 30/48 (62%)
 Frame = -2

Query: 773 EXPXXVXVXSSRPFGQRAVXXFXXHTRXTPIAGRFTPGAFTNQIQAAF 630
           E P  V V SSRP+G RAV  F  HT  T IAGRFTPG FTN I   +
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -3

Query: 658 LLLTRSKLHFREXRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 479
           L+ T  K  +    L+++ +P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 478 SSHSIGLMWWLLAR 437
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 420 VVCFPVTSAGMLWLICSSTVXPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,596
Number of Sequences: 5004
Number of extensions: 50686
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)