Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_F20
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   112   5e-26
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   109   6e-25
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.061
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  112 bits (270), Expect = 5e-26
 Identities = 54/96 (56%), Positives = 65/96 (67%)
 Frame = -1

Query: 656 FXNQIQXAFREXXXLIVLDPAQDHQPIXEXSYVNIPVIAXCNTNSPLRFVDIXIPCNTKS 477
           F N I   +RE   ++V DP  D Q I E S+VNIPVIA C+T+S L  VDI IP N K 
Sbjct: 110 FTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKG 169

Query: 476 SHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
             SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 170 RKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  109 bits (261), Expect = 6e-25
 Identities = 53/96 (55%), Positives = 64/96 (66%)
 Frame = -1

Query: 656 FXNQIQXAFREXXXLIVLDPAQDHQPIXEXSYVNIPVIAXCNTNSPLRFVDIXIPCNTKS 477
           F N I   +RE   +IV DP  D Q I E S+VNIPVIA C+T+S L  VD+ IP N K 
Sbjct: 111 FTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKG 170

Query: 476 SHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 369
             SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 171 YKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 614 LIVLDPAQDHQPIXEXSYVNIPVIAXCNTNSPLRFVDIXIPCNTKSSHSIGLMWWLLAR 438
           +++L+P ++     E    ++P I   +T++  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 351 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 494
           L G+R  +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,264
Number of Sequences: 5004
Number of extensions: 41399
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)