Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_F19
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    29   1.1  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.1  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   1.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.5  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 271 VKRRLLNPQPFRQFACRQTVYADLXSTGPGRHGSLYSAATLSCL 402
           + +  + P  F+ F+  +T+Y +L  + P    + +  AT SC+
Sbjct: 703 ISKLSIQPPTFQLFSTLETIYLELKDSMPPNEAADWMIATTSCM 746


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 324 LTTRKLAERLGVQQPALYWHFRNKR 250
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 614 LXSGGWIGPGVFYGGQNSVDGV 679
           L  GGW+ P ++Y G++SV  V
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINV 124


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 220 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLXSTGPGRHGSLYSAATLSC 399
           H F Q   +   +P++P    ++NP P R+ +      +   +T P ++G +     LS 
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR-SSTMNYKSVSTTTSPSKYGYVSGRIALSP 354

Query: 400 LTL 408
           + L
Sbjct: 355 IHL 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,692
Number of Sequences: 5004
Number of extensions: 53467
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)