Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_F12
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   209   4e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   209   4e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.56 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   9.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -2

Query: 600 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 421
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 420 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 241
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 240 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 118
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = -1

Query: 739 TIEDKVKWAREHLGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 563
           ++ DKV+WAREH  + + + S F Q+EMID I           T+RW TK+LPRKTH+G
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -2

Query: 600 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 421
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 420 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 241
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 240 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 118
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = -1

Query: 739 TIEDKVKWAREHLGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 563
           ++ DKV+WAREH  + + + S F Q+EMID I           T+RW TK+LPRKTH+G
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 409 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 588
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 589 SLCANEK 609
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 376 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 498
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 139 HGYTQEGSYSRRSCGYHNPS 80
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 361 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 489
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 421 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 546
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = +3

Query: 549 QLS*DPWCVLRGSFFVCQRE-----XXXXXXXXXXXXMQSIISSWANTE-STGIGSPKCS 710
           QLS D W +  G F +C  E                 +  ++S++     STG+ S  CS
Sbjct: 714 QLSYDLWYIFLGLFIICICEGGKISNPLDTDFSIFTVLFEVVSAYGTVGLSTGLSSSNCS 773

Query: 711 L-AHFTLSS 734
           L A FT  S
Sbjct: 774 LSARFTTIS 782


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 738 PSRTK*NGPENIWGNLSLSILCLPKMK*LTALVSPRAKDTKVSL 607
           PSR+  +  +NI G+  + +L     +  TAL SP+ KD K +L
Sbjct: 294 PSRSIVSPAKNIVGSTPVDVLSKLTPEFHTALSSPKWKDRKEAL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,428
Number of Sequences: 5004
Number of extensions: 70617
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)