Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_F12
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 220 9e-58
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 213 1e-55
07_01_0761 + 5849466-5850677 31 1.0
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.1
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.2
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 28 7.2
11_01_0710 - 5830475-5830595,5831498-5834124 28 9.5
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 220 bits (538), Expect = 9e-58
Identities = 103/153 (67%), Positives = 121/153 (79%)
Frame = -2
Query: 582 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 403
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 402 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 223
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 222 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 124
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -1
Query: 739 TIEDKVKWAREHLGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 563
TI DKV + + + IPVD+VF +DEMID I +RW +LPRKTH+G
Sbjct: 190 TIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 213 bits (520), Expect = 1e-55
Identities = 99/145 (68%), Positives = 117/145 (80%)
Frame = -2
Query: 582 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 403
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 402 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 223
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 222 EKINLKFIDTSSKFGHGRFQTPADK 148
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -1
Query: 739 TIEDKVKWAREHLGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 563
TI DKV + + + IPVD+VF +DEMID I +RW +LPRKTH+G
Sbjct: 190 TIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>07_01_0761 + 5849466-5850677
Length = 403
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 615 VSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 442
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 441 GQGIH 427
G +H
Sbjct: 183 GTVVH 187
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 381 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 286
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 525 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 376
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 375 SEKSITPMGGFPHYGEVNN 319
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 734 RGQSEMGQRTFGGTYPCRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATP 579
R +S G T+GG Y + R N+ L + +G R + AH++ATP
Sbjct: 197 RSESIRGSSTYGGRYDSSDSIEIRPNNNLDFGREGSVSGRRYDVGAHRDATP 248
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 648 QSIISSWANTESTGIGSPKCSLAHFTL 728
+S+ISSW + TG S CS+ + +
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVV 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,041,338
Number of Sequences: 37544
Number of extensions: 481081
Number of successful extensions: 1140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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