Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_F09
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    29   1.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   4.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.4  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.1  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   7.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    26   7.1  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.4  

>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 288 APTTSF-SLSDFPYSLYSPLLTMRPVLSKPQLNS 386
           +P+TS  S+  FP+S+  P L + P LS   LNS
Sbjct: 323 SPSTSQNSVQPFPFSIQQPPLHLEPPLSSNTLNS 356


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -1

Query: 675  NLSLTDNKVTLSWYDSDLNQYLELPELNSVVPLSEGA--FSHAWAGARATHGLFLDESSM 502
            +  +T N   L WYD++  + L+   L  +  L+E     +HA   +     L + +   
Sbjct: 1082 SFDITTNSDNLDWYDAETIKALD-EVLTEIPSLTESCILINHADILSSILDYLQVSKDKR 1140

Query: 501  RCVSEMLWQ--QXXXXXKMR*HLE*ESAGPQTTL 406
            R  + +L Q  Q     ++R  L  ES  P TTL
Sbjct: 1141 RMATHILGQINQRLTLSQVRNQLRIESLVPSTTL 1174


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
 Frame = +3

Query: 180 SVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSF---------SLSDFPYSL 332
           S RS +  R    A P+  P S+YD  + + S S   P TSF         + S   +S 
Sbjct: 18  SQRSMNLNRATLLAPPT--PSSLYDANNSTSSTSSQKPNTSFTSLFGPRKQTTSSPSFSH 75

Query: 333 YSPLLTMRP---VLSKPQLNSLSPRCKEESSVDQPILI 437
            +PL  + P     S+PQ+ +  P  +  S  D+P L+
Sbjct: 76  AAPLHPLSPPSFTHSQPQIQA-QPVPRRPSLFDRPNLV 112


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 177 YSVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSPLLTMR 356
           + +R+P+ +   + + PS A  S  DTT   +     + TTS S S    S  S  LT  
Sbjct: 330 HEIRAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKV 389

Query: 357 PVLSKPQLN-SLSPRCKEES 413
              +K  +N ++S +  +ES
Sbjct: 390 DSPNKSLVNDNVSAKHDKES 409


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 409 SSLHLGESELSWGFESTGRIVN 344
           S L LG + LSW +  +GRIV+
Sbjct: 327 SRLTLGGTSLSWSWRHSGRIVS 348


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 454 DALTSGIRIGWSTDDSSLHLGESELSWGFESTGRI 350
           + + + IR+ W  +D+++ LG +   W  +  GR+
Sbjct: 179 EKVANKIRVDWEKEDAAVLLGIALTGWSEQVPGRL 213


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 454 DALTSGIRIGWSTDDSSLHLGESELSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLD 278
           + + S +R+ W T  + L     E         ++V NG+ K+    +N  DV+G  L+
Sbjct: 178 EIMNSTLRVRWLTLFAKLSTKSPEYLEELIKDDKLVINGDNKDILLQINFVDVLGIMLE 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,254
Number of Sequences: 5004
Number of extensions: 53008
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)