Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_F09
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 53 2e-07
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 40 0.002
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 30 2.4
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 30 2.4
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 30 2.4
11_01_0281 + 2086674-2087652,2089200-2089483 29 5.6
01_03_0110 + 12633492-12633751,12634616-12634715,12635990-126360... 29 5.6
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832... 28 7.4
03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623... 28 7.4
11_02_0143 - 8758198-8758338,8758799-8758906,8759150-8759189,875... 28 9.7
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176... 28 9.7
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = -3
Query: 397 LGESELSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCV-VSYTLNGAPLGT 221
LGE+ S+GF TG+ + G++ EYG D V +DL+S+P + ++ NG LG
Sbjct: 141 LGETGHSFGFGGTGKFSHQGKFVEYGVKFGVGDTVVCAVDLDSKPLASIGFSRNGEWLGI 200
Query: 220 AFEFPRSALG-------------DRTLYPHVLTKNMCYKVNFGYE 125
A F S G + ++PHVL KN+ ++ F E
Sbjct: 201 AKHFDASDKGLGLVESPVSSMQWESAIFPHVLLKNVVVEMQFSKE 245
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 579 LSEGAFSHAWAGARATHGL 523
L +G F++ W+GARAT G+
Sbjct: 78 LHDGGFAYCWSGARATVGV 96
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = -3
Query: 445 TSGIR-IGWSTDDSSLH----LGESELSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYL 281
TSG++ +GW+T +G+S+ S+ F+ N + ++YG+ DV+G +
Sbjct: 156 TSGVQQLGWATLSCPFTDQKGVGDSDDSYAFDGRRVTKWNNDPEQYGQMWAVGDVIGCCI 215
Query: 280 DLESEPCVVSYTLNGAPLGTAFEFPRSALGDRTLYPHV-LTKNMCYKVNFG 131
+L++ +S+ NG LG AF+ R + YP + L++ +NFG
Sbjct: 216 NLDAGE--ISFYRNGNFLGVAFDGIRKVGPRKGYYPAISLSEGERCHLNFG 264
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 366 RALAALSIMENTKNMGNRLTKRMLLVLIWTWSRSRV 259
R+L +++ N KN+G L LL+ +W+W RS V
Sbjct: 280 RSLCSVASSHNIKNIGGSL----LLLQLWSWERSHV 311
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 366 RALAALSIMENTKNMGNRLTKRMLLVLIWTWSRSRV 259
R+L +++ N KN+G L LL+ +W+W RS V
Sbjct: 297 RSLCSVASSHNIKNIGGSL----LLLQLWSWERSHV 328
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 366 RALAALSIMENTKNMGNRLTKRMLLVLIWTWSRSRV 259
R+L +++ N KN+G L LL+ +W+W RS V
Sbjct: 1310 RSLCSVASSHNIKNIGGSL----LLLQLWSWERSHV 1341
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 445 TSGIRIGWSTDDSSLH--LGESELSWGF-ESTGRIVNNGEYKEYG-KSLNEKDVVGAYLD 278
T R+GW+T+++ +H +G +G+ + G V+ Y + E DV+G Y+
Sbjct: 228 TGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVHKAWRANYADQGYGEGDVLGFYIH 287
Query: 277 L 275
L
Sbjct: 288 L 288
>01_03_0110 +
12633492-12633751,12634616-12634715,12635990-12636085,
12636670-12636717,12636819-12636914
Length = 199
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 569 PSLSGTTEFSSGSSRYWLRSLSYQDKVTLLS 661
PS SG SS SSR+W+R + KV + S
Sbjct: 31 PSSSGVFFISSSSSRWWMRRRRGEGKVKISS 61
>11_02_0103 -
8320207-8320443,8320540-8320593,8321055-8321162,
8321406-8321551,8321697-8321892,8323312-8323533
Length = 320
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = -3
Query: 238 GAPLGTAFEFPRSALGDRTLYPHVLTKNMCYKVNFGYERYNMLSKTKIVRKRIEVPVEQV 59
G +GTA + +A+ D H +K C+ ++ + +KT V K I+V ++
Sbjct: 152 GKTMGTAIDSEPTAI-DLFKELHC-SKTKCFSEPV--KKAILAAKTTNVMKEIQVELDAK 207
Query: 58 LEEKRVIEEEVNRLKKKK 5
E V++EE+ RLK ++
Sbjct: 208 KLESAVLQEELERLKAQE 225
>03_02_0184 +
6232429-6232515,6232634-6232751,6233198-6233286,
6233364-6233428,6233520-6233608,6234167-6234300,
6234387-6235133
Length = 442
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 162 VSTCGYSVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSP 341
+S +S SP+A + V GAPL+ + T G + AP F + P L SP
Sbjct: 299 LSARSFSFASPAARSTTTPPVHRGAPLTPFSTKGGQKAP---APAQQFPRTPRPSFLQSP 355
>11_02_0143 -
8758198-8758338,8758799-8758906,8759150-8759189,
8759396-8759637,8761057-8761281
Length = 251
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 115 MLSKTKIVRKRIEVPVEQVLEEKRVIEEEVNRLKKKK 5
+ +KT V K I+V ++ E V++EE+ RLK ++
Sbjct: 170 LAAKTTNVMKEIQVELDAKKLESAVLQEELERLKARE 206
>10_01_0154 -
1764554-1764727,1764829-1764927,1765710-1766172,
1766255-1766541
Length = 340
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 618 QYLELPELNSVVPLSEGAFSHAWAGARATHGLFLDESSMRCV 493
+YL + +V+ L +G F G A GLFLDE S+ V
Sbjct: 120 RYLRRIDFTNVI-LMQGFFKQLEMGCPAMRGLFLDECSVEDV 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,629
Number of Sequences: 37544
Number of extensions: 348549
Number of successful extensions: 1132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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