Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_F08
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.0
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 26 5.3
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.0
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.0
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.2
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.2
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 356 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDNVLYDNIRTVLKDNKTAL 177
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 176 LSASIQASLPSSEIYRQL 123
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 257 CYFSTPPFDNVLYDNIRTVLKDNKTALLSASI 162
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 102 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 224
R +A Y+ + LGG++ S+ EK F + N DV+ +
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAK 152
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 467 KLRALLVVIPRILRSPPPTHPLIEDV 390
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 657 FHTPTTPDLTSISINPLTP-X*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 481
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 480 NDESQA 463
+S +
Sbjct: 196 LQKSHS 201
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 684 TSTXSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 505
T T S+NP T I N + K F+ PP++++ P +L P+S K
Sbjct: 687 TVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPEYAKT 744
Query: 504 VSP 496
V P
Sbjct: 745 VIP 747
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 144 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 46
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 332 LVTHKELALKVSSIIGTRVYVFDPSCY 252
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 117 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 218
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -3
Query: 684 TSTXSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 505
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 504 VSPP 493
S P
Sbjct: 1676 TSTP 1679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,663
Number of Sequences: 5004
Number of extensions: 52481
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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