Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_F08
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 28 0.16
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.44
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.78
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
11_06_0610 - 25449085-25453284 29 4.1
09_04_0220 - 15813809-15815380 29 4.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.6
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 27.9 bits (59), Expect(2) = 0.16
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 296 SIIGTRVYVFDPSCYFSTPPFDNVLYDNIRTVLKDNKTAL 177
S+I + DPSC F F N LYD T +++ + +L
Sbjct: 227 SLIAPEIITEDPSCRFQILGFQN-LYDKACTKIEEARASL 265
Score = 24.6 bits (51), Expect(2) = 0.16
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 335 NLVTHKELALKVSSIIGTRVYV 270
+L+ H+E+ ++VS G+++YV
Sbjct: 193 DLLGHEEILIEVSRTFGSKIYV 214
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = -3
Query: 708 PPXPXXSXTS-TXSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 538
P P S TS + S ++PT+P TS +P +P +P P PS
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 537 LTPSSLGMXKGVSPPY 490
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.5 bits (68), Expect = 0.78
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -3
Query: 708 PPXPXXSXTS-TXSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 538
P P S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 537 LTPSS--LGMXKGVSPPY 490
+PSS L SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 83 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 723 PXXIXPPXPXXSXTSTXSSNPRFHTPTTPDLTSIS-INPLTPX*KEFAPGLKPPLSSE 553
P PP P +S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 613 PAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
>09_04_0220 - 15813809-15815380
Length = 523
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -1
Query: 317 ELALKVSSIIGTRVYVFDPSCYFSTPPFD----NVLYDNIRTVLKDNKTALLSASIQASL 150
EL V+ ++G F P CYF + N +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 149 P 147
P
Sbjct: 89 P 89
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 75 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 221
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 443 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 354
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,696,624
Number of Sequences: 37544
Number of extensions: 388686
Number of successful extensions: 1164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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