Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_F08
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 1.2
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 2.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.7
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 29 4.9
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 28 6.5
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 28 6.5
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.6
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.6
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 705 PXPXXSXTSTXSSNPRFHTPTTPDLTSISINPLTP---X*KEFAPGLKPPLSSEAPSAYL 535
P P + T+T +NP TPTT + +I +P P AP + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAP-VNPTSSTTAPTAPV 546
Query: 534 TPSS 523
P+S
Sbjct: 547 NPTS 550
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 705 PXPXXSXTSTXSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPS 526
P P + T+T +NP TPTT TS N ++P + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 525 SLGMXKGVSPP 493
+ S P
Sbjct: 549 TTPTHTTASQP 559
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -3
Query: 708 PPXPXXSXTS-TXSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 538
P P S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 537 LTPSSLGMXKGVSPPY 490
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -3
Query: 708 PPXPXXSXTS-TXSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 538
P P S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 537 LTPSSLGMXKGVSPPY 490
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 705 PXPXXSXTSTXSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPS 544
P S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 127 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTLS 234
W + GR + A L SLRT+LMLS N+L+
Sbjct: 50 WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 127 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTLS 234
W + GR + A L SLRT+LMLS N+L+
Sbjct: 50 WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 567 PLSSEAPSAYLTPSSLGMXKGVSPP 493
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 567 PLSSEAPSAYLTPSSLGMXKGVSPP 493
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,764
Number of Sequences: 27780
Number of extensions: 294834
Number of successful extensions: 990
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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