Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_E17
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 35 0.015
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 30 0.43
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 28 1.7
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.0
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 27 3.0
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 3.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 4.0
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 27 4.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.0
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 7.0
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 34.7 bits (76), Expect = 0.015
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = -3
Query: 310 KKERRKMRANSSESDCSNMEVGSESSGQVAAVSS---TAGFKSPMHGAPPMNTGPMELDD 140
+K R +R S S +N+E G+ ++ + VSS + + G+P + +LD+
Sbjct: 152 RKASRSLRLFES-STSNNLETGNSTNTALHNVSSPLESVSERLSKSGSPSVGA-QHDLDE 209
Query: 139 ISSEKQSGARRTVS*HVEAAPKRRETTKS*NQSLQSYLFFRKKKK 5
+ SEK + R S +APKRR+ + S +++ +Y+ KK
Sbjct: 210 VISEKDTSLSRRSSRGRSSAPKRRKDSGS-SKTTATYIPHNPSKK 253
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 42 LWFYDFVVSRRFGAASTCQLTVRRAPLCFSLDMSSSSIGPVFIGGAPCMGDLNP 203
+W + S + + ++ + A LC S+++ S +GP+F+G +G P
Sbjct: 95 IWTSNGFGSIEYSVMAQFNVSAQVATLCLSMNILGSGLGPMFLGPLSDIGGRKP 148
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 592 NIATINAFPGQNG-ILHQNGALLHQNGSLIQNIQSPTVVHVLKNEPFDVKSLQDKYT 425
+I ++ +P G ILH+N +NG Q +QS T + + + P +S + T
Sbjct: 137 HITSLLTYPMSIGAILHKNSPYNLKNGLTPQGLQSLTALRYMLHRPLSAQSTDPRPT 193
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -3
Query: 376 NGYDKKSNGFGSGSSPTRSDFRKKERRKMRANSSESDCSNMEVGSESSGQVAAVSSTAGF 197
NG K+++G S R + ++ R MR S +N+++ S S ++ ++ F
Sbjct: 400 NGLPKEAHG--CDFSRVRPWYLDQQARYMRQTILFSQYNNLDINSFFSHYMSNIAGKVKF 457
Query: 196 KSPMHG 179
+S +HG
Sbjct: 458 RSLLHG 463
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 364 KKSNGFGSGSSPTRSDFRK-KERRKMRANSSESDCSNMEVGSESSGQVAAVSST 206
KK S P++ +K K+ +K +SSES+ + SESS + SS+
Sbjct: 55 KKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSS 108
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 116 TTLFLTGYVVQFHRACIHRRSSMHGRLESRRRGDSGDLPAALRPDL 253
++ FLT V+F R C H R S G L + G S D A+ P L
Sbjct: 2531 SSFFLTDDFVRFIRVCFHSRIS--GNLLTLLHGISFDSTKAVAPVL 2574
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 379 DNGYDKKSNGFGSGSSPTRSDFRKKERRKMRANSSESDCSNMEVGSESSGQVAAVSST 206
D+ D S+ S S + D +SS S+ N + +SG+V+A SST
Sbjct: 278 DSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSST 335
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 439 QDKYTPNGLHHSNFQNPMLIDNGYDKKSNGFGSGSSPTRSDFRKKERRKMRANSSESD 266
+D+Y P +++ D G+D+ +R+ +R+K R A SSESD
Sbjct: 239 EDRYRPTRRRERHYRTRD--DEGFDEFGRSRDGRWRESRTSYREKHRYDRDALSSESD 294
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 367 DKKSNGFGSGSSPTRSDFRKKERRKMR 287
DK++ G S P SD +KK ++K++
Sbjct: 120 DKEARGQNSNDQPEESDDKKKRKKKVK 146
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 250 VGSESSGQVAAVSSTAGFKSPMHGAPPMNTGPMELD 143
+G+ SS VAA+ T F GAP +++G + D
Sbjct: 137 IGTASSDSVAAIMCTRFFAGLFAGAPVVSSGGVMAD 172
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 493 FECFVLSFRFDVKALHSDVRFHFVP 567
+EC LS +F ++ LHSD+ F P
Sbjct: 192 YECHDLSKKFLIETLHSDIYFLHSP 216
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 201 PAVEETAATCPLLSDPTSMFEQSDSELFARIFRLSFFLK 317
P+ A + P S+PTS++ +S E + +RLS K
Sbjct: 421 PSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQK 459
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.0
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Frame = -3
Query: 439 QDKYTPNGLHHSNFQNPMLIDNGYDKKSNGFGSGSSPTRS--DFRKKERRKMRANSSESD 266
Q Y P+G + N P + +NGFG S PT S D+ +++++ N
Sbjct: 46 QQPYQPDG-YAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADYGQQQQQMYGYNGMMPQ 104
Query: 265 CSNMEVGSESSGQVAAVSSTAGFKSPMHGAPPMNTGPM 152
N G Q A+ A P P TG M
Sbjct: 105 TMN-NTGFMQPQQTGAIPGFA--PQPTGFVQPQPTGFM 139
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 346 GSGSSPTRSDFRKKERRKMRANSSESDCSNMEVGSESSGQVAAVSSTAGFKSPMHG 179
G SP K + R+ SS ++E S + A +S + GF++ HG
Sbjct: 135 GINQSPQGISVEKLGKEDNRSRSSTPASPSLESHEFSESREAGLSQSNGFEARSHG 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,363
Number of Sequences: 5004
Number of extensions: 60497
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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