Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_E14
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 126 4e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 122 4e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 43 6e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 7.1
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 26 7.1
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 126 bits (304), Expect = 4e-30
Identities = 59/92 (64%), Positives = 70/92 (76%)
Frame = -3
Query: 636 FRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 457
+R+ RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 456 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 361
+LLAREVLR+RG L R WDV+ DL+FYR P
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = -2
Query: 778 NPXXXXVXXSRPFGQXXXXKFXAHTGXTXIAGRFTPGGF 662
NP V +R +G KF AHTG T IAGRFTPG F
Sbjct: 72 NPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNF 110
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 122 bits (295), Expect = 4e-29
Identities = 58/92 (63%), Positives = 69/92 (75%)
Frame = -3
Query: 636 FRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 457
+R+ RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 456 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 361
+LLAREVLRLRG + R W+V+ DL+FYR P
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/39 (58%), Positives = 24/39 (61%)
Frame = -2
Query: 778 NPXXXXVXXSRPFGQXXXXKFXAHTGXTXIAGRFTPGGF 662
NP V SRP+G KF AHTG T IAGRFTPG F
Sbjct: 73 NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNF 111
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = -3
Query: 675 HQGAFXKPDPKXHFRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 496
++G + D K + L+++L+P ++ EA ++P I + +TD+ R V IP
Sbjct: 164 NRGKLIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIP 223
Query: 495 CNTKSSHSIGLMWWLLAR 442
N S L+ LL+R
Sbjct: 224 ANDDSLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 579 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 469
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 425 VVCFPVTSAGMLWLICSSTVXPEESEKD 342
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 471 IGLMWWLLAREVLRLRGVLPRDQRWD 394
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 639 HFRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 508
HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 263 HFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 633 RDXRLLIVLDPAQDHQPITEASY 565
RD RLL+++ P H P+ Y
Sbjct: 64 RDDRLLLIVGPCSLHDPVAAKEY 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,929
Number of Sequences: 5004
Number of extensions: 51864
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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