Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_E14
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 123 1e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 123 1e-28
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 31 0.79
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 28 9.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 123 bits (297), Expect = 1e-28
Identities = 54/92 (58%), Positives = 68/92 (73%)
Frame = -3
Query: 636 FRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 457
F + RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179
Query: 456 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 361
WLLAR VL++RG + +WDV+VDLFFYR P
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/64 (40%), Positives = 31/64 (48%)
Frame = -2
Query: 787 AXXNPXXXXVXXSRPFGQXXXXKFXAHTGXTXIAGRFTPGGFX*TRSQXAFP*PSSLDCI 608
A NP V +RP+GQ KF +TG IAGR TPG F + Q +F P L
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT-NQLQTSFSEPRLLILT 129
Query: 607 GPCT 596
P T
Sbjct: 130 DPRT 133
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 123 bits (297), Expect = 1e-28
Identities = 54/92 (58%), Positives = 69/92 (75%)
Frame = -3
Query: 636 FRDXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 457
F + RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179
Query: 456 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 361
WLLAR VL++RG + +WDV+VDLFFYR P
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/64 (40%), Positives = 31/64 (48%)
Frame = -2
Query: 787 AXXNPXXXXVXXSRPFGQXXXXKFXAHTGXTXIAGRFTPGGFX*TRSQXAFP*PSSLDCI 608
A NP V +RP+GQ KF +TG IAGR TPG F + Q +F P L
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT-NQLQTSFSEPRLLILT 129
Query: 607 GPCT 596
P T
Sbjct: 130 DPRT 133
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +2
Query: 473 EWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRXSRKCXLGS 652
EW++L+L G A+++ SGE L A G V+G A T +R+
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG---DHNQVVGGGGGANYRTTATAAARRSY--R 126
Query: 653 GLXKAPWCETSRNXRXTGVRG 715
G+ + PW + + R T RG
Sbjct: 127 GVRRRPWGKFAAEIRDTRRRG 147
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR*VEHN 133
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR 148
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 465 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 376
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR*VEHN 133
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 389 WLICSSTVXPEESEKDEQQARE 324
WLIC V P K+ +QARE
Sbjct: 284 WLICQGNVVPIPGAKNAEQARE 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,701
Number of Sequences: 37544
Number of extensions: 371878
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -