Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_E13
         (935 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S. cerev...    33   1.5  
AY552790-1|AAT00538.1|  271|Homo sapiens CD200 cell surface glyc...    32   3.4  
AY284976-1|AAQ19773.1|  250|Homo sapiens CD200 cell surface glyc...    32   3.4  

>BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S.
           cerevisiae) protein.
          Length = 619

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +1

Query: 34  AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRR 213
           +G S  R +HD+  PS  PR+ R  S+D S PR      PD  SR  R    +D+  LRR
Sbjct: 211 SGASPRRVRHDSPDPSP-PRRARHGSSDISSPRRVHNNSPD-TSR--RTLGSSDTQQLRR 266

Query: 214 SK 219
           ++
Sbjct: 267 AR 268


>AY552790-1|AAT00538.1|  271|Homo sapiens CD200 cell surface
           glycoprotein receptor isoform 2 variant 2 protein.
          Length = 271

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 101 GSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIASISGDPNG--LRRRVSRFECETRLVKS 274
           G  LQ + +P++ L   R   AV   +  KP A IS  P G  L  +   +   T  VKS
Sbjct: 137 GYHLQVLVTPEVNLFQSRNITAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKS 196

Query: 275 HCLEPPDSRGSTVS 316
            C  P +   STV+
Sbjct: 197 TC--PWEGHKSTVT 208


>AY284976-1|AAQ19773.1|  250|Homo sapiens CD200 cell surface
           glycoprotein receptor isoform 2 protein.
          Length = 250

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 101 GSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIASISGDPNG--LRRRVSRFECETRLVKS 274
           G  LQ + +P++ L   R   AV   +  KP A IS  P G  L  +   +   T  VKS
Sbjct: 116 GYHLQVLVTPEVNLFQSRNITAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKS 175

Query: 275 HCLEPPDSRGSTVS 316
            C  P +   STV+
Sbjct: 176 TC--PWEGHKSTVT 187


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,333,453
Number of Sequences: 237096
Number of extensions: 2042881
Number of successful extensions: 5189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5187
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)