Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_E13
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.99 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   5.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 43  SLNRSQHDAALPSTTPRQERKSST 114
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -3

Query: 291 GGSKQCDFTSRVSHSKRETRRRSPFGSPEIDAIGFFLNTCITAPKVRI*LSSMSGLGIVC 112
           G +     T+   +S R     S   S E+D IG+  N   T     +  SS SG+ +  
Sbjct: 179 GTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMST 238

Query: 111 RRL 103
            RL
Sbjct: 239 SRL 241


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 396 SYHPAGXMPERL*GPKASRKPNPGKDMLTVEPRESGGSKQCD 271
           S  P G  PERL  PK  ++  P   ++ V P +     Q D
Sbjct: 592 SSQPYG-FPERLLLPKGKKEGMPYNVLVVVSPFDDSNVVQID 632


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 396 SYHPAGXMPERL*GPKASRKPNPGKDMLTVEPRESGGSKQCD 271
           S  P G  PERL  PK  ++  P   ++ V P +     Q D
Sbjct: 592 SSQPYG-FPERLLLPKGKKEGMPYNVLVVVSPFDDSNVVQID 632


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 345 SRKPNPGKDMLTVEPRESGGSK 280
           +R P  GKD+L  + R   GS+
Sbjct: 487 TRTPGFGKDVLATDERSFSGSR 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,484
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)