Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_E07
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.031
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.66
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 8.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 8.1
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 8.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.031
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +2
Query: 428 PTCPXPXXPXSAPX-VPXXXPGXXIPXPXPPPXPXXXSXXXXPPPP 562
P P P AP +P P + P PPP P + PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.50
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +2
Query: 416 PXXXPTCPXPXXPXSAPX-VPXXXPGXXIPXPXPPPXPXXXSXXXXPPPP 562
P P P AP VP P P P PPP + PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +2
Query: 416 PXXXPTCPXPXXPXSAPXVPXXXPGXXIPXPXP---PPXPXXXSXXXXPPP 559
P P+ P P P AP P P I P P P P PPP
Sbjct: 429 PSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +2
Query: 416 PXXXPTCPX-PXXPXSAPXVPXXXPGXXIPXPXPPPXP 526
P P+ P P P P P P P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +2
Query: 452 PXSAPXVPXXXPGXXIPX---PXPPPXPXXXSXXXXPPPPS 565
P P +P P +P P PPP P + PP S
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNS 270
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +2
Query: 383 SPPXXRHXXTXPXXXPTCPXPXXP----XSAPXVPXXXPGXXIPXPXPPPXPXXXSXXXX 550
+PP + P P P P P SAP +P P IP PPP
Sbjct: 129 APPTPQSELRPPTSAP--PRPSIPPPSPASAPPIPSKAP--PIPSSLPPPAQPAAPVKSP 184
Query: 551 PPPPSXXSXV 580
P PS S V
Sbjct: 185 PSAPSLPSAV 194
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +2
Query: 416 PXXXPTCPXPXXPXSAPXVPXXXPGXXIPXPXPPPXPXXXSXXXXPPPPSXXS 574
P P P P S P P P PPP PPPPS S
Sbjct: 108 PPKEPALPSRGTP-SLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSS 159
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +2
Query: 383 SPPXXRHXXTXPXXXPTCPXPXXPXSAPXVPXXXPGXXIPXPXPPPXPXXXSXXXXPPPP 562
S P R P P P S P P P P PPP P S P P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP-PLPASSAPSVPNP 1746
Query: 563 SXXS 574
S
Sbjct: 1747 GDRS 1750
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 506 PXPPPXPXXXSXXXXPPPPSXXSXVXXXK 592
P PPP P PPPP V K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Frame = +2
Query: 383 SPPXXRHXXTXPXXXPTCPXPXXPX--SAPXVPXXX---PGXXIPXPXPPPXPXXXSXXX 547
+PP P P+ P P AP VP P P PP P +
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 548 XPPPPS 565
PPPS
Sbjct: 1190 PVPPPS 1195
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 428 PTCPXPXXPXSAPXVPXXXPGXXIPXPXP 514
P P P AP VP PG + P P
Sbjct: 275 PMMNVPMGPGGAPLVPPPPPGMVMASPSP 303
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 330 PXPLRSLISNLSNTCDLTPLPEW 262
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,690
Number of Sequences: 5004
Number of extensions: 16778
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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