Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_E06
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 636 LRPGHGAAPPKRGXTAS---VCSAVXXSCHNGDTSSS 737
           ++PGHG+ P K+  ++S    CS     C  G    S
Sbjct: 271 VQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKS 307


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 73  LNLTKNSCRSQPAPYLGP 126
           LNL+K S    P P +GP
Sbjct: 875 LNLSKKSPSPSPRPLVGP 892


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 628 SYLCDQDTALHLPSGG 675
           ++LC  D   +LPSGG
Sbjct: 231 TFLCKGDGKWYLPSGG 246


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 512 TRPAASFCEMVH-SQKSSIAFHDS 580
           T    SFCEM+H +Q +  + H++
Sbjct: 566 TAATLSFCEMIHNAQVNKRSIHNN 589


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 193 PTVPRXAGPVATSDTTTGSLXSAG 264
           PT+P  AGP+    +   +L  AG
Sbjct: 443 PTMPSMAGPIRRRISDKSALSLAG 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,235
Number of Sequences: 438
Number of extensions: 5649
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)