Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_D17
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    29   4.8  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    29   4.8  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 594  LISKCRCAPSIRNLTPVRTCPEG 662
            L  +CRC P    +T  + CPEG
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEG 1419


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 594  LISKCRCAPSIRNLTPVRTCPEG 662
            L  +CRC P    +T  + CPEG
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEG 1419


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 438 DSEHDQYVEFTNSDLEADAAQSTVPFID 355
           D  HD+   FTN  L       T PF+D
Sbjct: 40  DKGHDELKAFTNEQLNVFLTDHTAPFVD 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,256
Number of Sequences: 27780
Number of extensions: 194089
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)